RatDEGdb: a knowledge base of differentially expressed genes in the rat as a model object in biomedical research.

Autor: Chadaeva IV; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Filonov SV; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia Novosibirsk State University, Novosibirsk, Russia., Zolotareva KA; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Khandaev BM; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Ershov NI; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Podkolodnyy NL; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia Novosibirsk State University, Novosibirsk, Russia., Kozhemyakina RV; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Rasskazov DA; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Bogomolov AG; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Kondratyuk EY; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia Siberian Federal Scientific Centre of Agro-BioTechnologies of the Russian Academy of Sciences, Krasnoobsk, Novosibirsk region, Russia., Klimova NV; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Shikhevich SG; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Ryazanova MA; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Fedoseeva LA; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Redina ОЕ; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Kozhevnikova OS; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Stefanova NA; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Kolosova NG; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Markel AL; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia Novosibirsk State University, Novosibirsk, Russia., Ponomarenko MP; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Oshchepkov DY; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.

Publikováno v: Vavilovskii zhurnal genetiki i selektsii [Vavilovskii Zhurnal Genet Selektsii] 2023 Dec; Vol. 27 (7), pp. 794-806.

Promoters of genes encoding β-amylase, albumin and globulin in food plants have weaker affinity for TATA-binding protein as compared to non-food plants: in silico analysis.

Autor: Vishnevsky OV; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russi., Chadaeva IV; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Sharypova EB; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Khandaev BM; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Zolotareva KA; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Kazachek AV; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Ponomarenko PM; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Podkolodny NL; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia Institute of Computational Mathematics and Mathematical Geophysics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Rasskazov DA; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Bogomolov AG; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Podkolodnaya OA; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Savinkova LK; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Zemlyanskaya EV; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Ponomarenko MP; Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.

Publikováno v: Vavilovskii zhurnal genetiki i selektsii [Vavilovskii Zhurnal Genet Selektsii] 2022 Dec; Vol. 26 (8), pp. 798-805.

Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation.

Autor: Gunbin KV; Center of Brain Neurobiology and Neurogenetics, Institute of Cytology and Genetics SB RAS, Lavrentyeva Ave. 10, 630090, Novosibirsk, Russia. genkvg@gmail.com.; Systems Biology Department, Institute of Cytology and Genetics SB RAS, Lavrentyeva Ave. 10, 630090, Novosibirsk, Russia. genkvg@gmail.com.; Novosibirsk State University, Pirogova Str., 2, 630090, Novosibirsk, Russia. genkvg@gmail.com., Ponomarenko MP; Systems Biology Department, Institute of Cytology and Genetics SB RAS, Lavrentyeva Ave. 10, 630090, Novosibirsk, Russia.; Novosibirsk State University, Pirogova Str., 2, 630090, Novosibirsk, Russia., Suslov VV; Systems Biology Department, Institute of Cytology and Genetics SB RAS, Lavrentyeva Ave. 10, 630090, Novosibirsk, Russia.; Novosibirsk State University, Pirogova Str., 2, 630090, Novosibirsk, Russia., Gusev F; Center of Brain Neurobiology and Neurogenetics, Institute of Cytology and Genetics SB RAS, Lavrentyeva Ave. 10, 630090, Novosibirsk, Russia.; Vavilov Institute of General Genetics RAS, Gubkina Str., 3, 119333, Moscow, Russia.; Brudnick Neuropsychiatric Research Institute, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA, 01655, USA., Fedonin GG; Vavilov Institute of General Genetics RAS, Gubkina Str., 3, 119333, Moscow, Russia.; Institute for Information Transmission Problems (the Kharkevich Institute) RAS, Bolshoy Karetny per., 19-1, 127051, Moscow, Russia., Rogaev EI; Center of Brain Neurobiology and Neurogenetics, Institute of Cytology and Genetics SB RAS, Lavrentyeva Ave. 10, 630090, Novosibirsk, Russia. evgeny.rogaev@umassmed.edu.; Vavilov Institute of General Genetics RAS, Gubkina Str., 3, 119333, Moscow, Russia. evgeny.rogaev@umassmed.edu.; Brudnick Neuropsychiatric Research Institute, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA, 01655, USA. evgeny.rogaev@umassmed.edu.

Publikováno v: Molecular neurobiology [Mol Neurobiol] 2018 Mar; Vol. 55 (3), pp. 1871-1904. Date of Electronic Publication: 2017 Feb 24.

[Candidate SNP-markers altering TBP binding affinity for promoters of the Y-linked genes CDY2A, SHOX, and ZFY are lowering many indexes of reproductive potential in men].

Autor: Ponomarenko MP; Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia Novosibirsk State University, Novosibirsk, Russia., Sharypova EB; Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Drachkova IA; Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Savinkova LK; Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Chadaeva IV; Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Rasskazov DA; Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Ponomarenko PM; Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Osadchuk LV; Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Osadchuk AV; Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.

Publikováno v: Vavilovskii zhurnal genetiki i selektsii [Vavilovskii Zhurnal Genet Selektsii] 2020 Nov; Vol. 24 (7), pp. 785-793.

Candidate SNP Markers of Familial and Sporadic Alzheimer's Diseases Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters.

Autor: Ponomarenko P; Children's Hospital Los Angeles, University of Southern CaliforniaLos Angeles, CA, United States., Chadaeva I; Division for System Biology, Institute of Cytology and Genetics of Siberian Branch of Russian Academy of SciencesNovosibirsk, Russia.; Faculty of Natural Sciences, Novosibirsk State UniversityNovosibirsk, Russia., Rasskazov DA; Division for System Biology, Institute of Cytology and Genetics of Siberian Branch of Russian Academy of SciencesNovosibirsk, Russia., Sharypova E; Division for System Biology, Institute of Cytology and Genetics of Siberian Branch of Russian Academy of SciencesNovosibirsk, Russia., Kashina EV; Division for System Biology, Institute of Cytology and Genetics of Siberian Branch of Russian Academy of SciencesNovosibirsk, Russia., Drachkova I; Division for System Biology, Institute of Cytology and Genetics of Siberian Branch of Russian Academy of SciencesNovosibirsk, Russia., Zhechev D; Division for System Biology, Institute of Cytology and Genetics of Siberian Branch of Russian Academy of SciencesNovosibirsk, Russia., Ponomarenko MP; Division for System Biology, Institute of Cytology and Genetics of Siberian Branch of Russian Academy of SciencesNovosibirsk, Russia.; Faculty of Natural Sciences, Novosibirsk State UniversityNovosibirsk, Russia., Savinkova LK; Division for System Biology, Institute of Cytology and Genetics of Siberian Branch of Russian Academy of SciencesNovosibirsk, Russia., Kolchanov N; Division for System Biology, Institute of Cytology and Genetics of Siberian Branch of Russian Academy of SciencesNovosibirsk, Russia.; Faculty of Natural Sciences, Novosibirsk State UniversityNovosibirsk, Russia.

Publikováno v: Frontiers in aging neuroscience [Front Aging Neurosci] 2017 Jul 20; Vol. 9, pp. 231. Date of Electronic Publication: 2017 Jul 20 (Print Publication: 2017).