Top-down mass spectrometry of native proteoforms and their complexes: a community study.

Autor: Habeck T; Technische Universität Darmstadt, Darmstadt, Germany., Brown KA; University of Wisconsin-Madison, Madison, WI, USA., Des Soye B; Northwestern University, Evanston, IL, USA., Lantz C; University of California, Los Angeles, CA, USA., Zhou M; Pacific Northwest National Laboratory, Richland, WA, USA.; Zhejiang University, Zhejiang, China., Alam N; Northeastern University, Boston, MA, USA., Hossain MA; Northeastern University, Boston, MA, USA., Jung W; University of California, Los Angeles, CA, USA., Keener JE; University of Arizona, Tuscon, AZ, USA., Volny M; Genentech Inc., San Francisco, CA, USA., Wilson JW; Pacific Northwest National Laboratory, Richland, WA, USA., Ying Y; Sun Yat-sen University, Guangzhou, China., Agar JN; Northeastern University, Boston, MA, USA.; Consortium for Top-Down Proteomics, Cambridge, MA, USA., Danis PO; Consortium for Top-Down Proteomics, Cambridge, MA, USA., Ge Y; University of Wisconsin-Madison, Madison, WI, USA.; Consortium for Top-Down Proteomics, Cambridge, MA, USA., Kelleher NL; Northwestern University, Evanston, IL, USA.; Consortium for Top-Down Proteomics, Cambridge, MA, USA., Li H; Sun Yat-sen University, Guangzhou, China., Loo JA; University of California, Los Angeles, CA, USA.; Consortium for Top-Down Proteomics, Cambridge, MA, USA., Marty MT; University of Arizona, Tuscon, AZ, USA., Paša-Tolić L; Pacific Northwest National Laboratory, Richland, WA, USA.; Consortium for Top-Down Proteomics, Cambridge, MA, USA., Sandoval W; Genentech Inc., San Francisco, CA, USA., Lermyte F; Technische Universität Darmstadt, Darmstadt, Germany. frederik.lermyte@tu-darmstadt.de.

Publikováno v: Nature methods [Nat Methods] 2024 Dec; Vol. 21 (12), pp. 2388-2396. Date of Electronic Publication: 2024 May 14.

Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry.

Autor: Srzentić K; Northwestern University, Evanston, Illinois 60208-0001, United States., Fornelli L; Northwestern University, Evanston, Illinois 60208-0001, United States., Tsybin YO; Spectroswiss, EPFL Innovation Park, Building I, 1015 Lausanne, Switzerland., Loo JA; University of California-Los Angeles, Los Angeles, California 90095, United States., Seckler H; Northwestern University, Evanston, Illinois 60208-0001, United States., Agar JN; Northeastern University, Boston, Massachusetts 02115, United States., Anderson LC; National High Magnetic Field Laboratory, Tallahassee, Florida 32310, United States., Bai DL; University of Virginia, Charlottesville, Virginia 22901, United States., Beck A; Centre d'immunologie Pierre Fabre, 74160 Saint-Julien-en-Genevois, France., Brodbelt JS; University of Texas at Austin, Austin, Texas 78712-1224, United States., van der Burgt YEM; Leiden University Medical Centre, 2300 RC Leiden, The Netherlands., Chamot-Rooke J; Institute Pasteur, 75015 Paris, France., Chatterjee S; University of Antwerp, 2000 Antwerp, Belgium., Chen Y; Biogen, Inc., Cambridge, Massachusetts 02142-1031, United States., Clarke DJ; The University of Edinburgh, EH9 3FJ Edinburgh, United Kingdom., Danis PO; Consortium for Top-Down Proteomics, Cambridge, Massachusetts 02142, United States., Diedrich JK; The Scripps Research Institute, La Jolla, California 92037, United States., D'Ippolito RA; University of Virginia, Charlottesville, Virginia 22901, United States., Dupré M; Institute Pasteur, 75015 Paris, France., Gasilova N; Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland., Ge Y; University of Wisconsin-Madison, Madison, Wisconsin 53706, United States., Goo YA; University of Maryland, Baltimore, Maryland 21201, United States., Goodlett DR; University of Maryland, Baltimore, Maryland 21201, United States., Greer S; University of Texas at Austin, Austin, Texas 78712-1224, United States., Haselmann KF; Novo Nordisk, DK-2760 Malov, Denmark., He L; National High Magnetic Field Laboratory, Tallahassee, Florida 32310, United States., Hendrickson CL; National High Magnetic Field Laboratory, Tallahassee, Florida 32310, United States., Hinkle JD; University of Virginia, Charlottesville, Virginia 22901, United States., Holt MV; Baylor College of Medicine, Houston, Texas 77030-3411, United States., Hughes S; The University of Edinburgh, EH9 3FJ Edinburgh, United Kingdom., Hunt DF; University of Virginia, Charlottesville, Virginia 22901, United States., Kelleher NL; Northwestern University, Evanston, Illinois 60208-0001, United States., Kozhinov AN; Spectroswiss, EPFL Innovation Park, Building I, 1015 Lausanne, Switzerland., Lin Z; University of Wisconsin-Madison, Madison, Wisconsin 53706, United States., Malosse C; Institute Pasteur, 75015 Paris, France., Marshall AG; National High Magnetic Field Laboratory, Tallahassee, Florida 32310, United States.; Florida State University, Tallahassee, Florida 32310-4005, United States., Menin L; Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland., Millikin RJ; University of Wisconsin-Madison, Madison, Wisconsin 53706, United States., Nagornov KO; Spectroswiss, EPFL Innovation Park, Building I, 1015 Lausanne, Switzerland., Nicolardi S; Leiden University Medical Centre, 2300 RC Leiden, The Netherlands., Paša-Tolić L; Pacific Northwest National Laboratory, Richland, Washington 99354, United States., Pengelley S; Bruker Daltonik GmbH, 28359 Bremen, Germany., Quebbemann NR; University of California-Los Angeles, Los Angeles, California 90095, United States., Resemann A; Bruker Daltonik GmbH, 28359 Bremen, Germany., Sandoval W; Genentech, Inc., South San Francisco, California 94080-4990, United States., Sarin R; Biogen, Inc., Cambridge, Massachusetts 02142-1031, United States., Schmitt ND; Northeastern University, Boston, Massachusetts 02115, United States., Shabanowitz J; University of Virginia, Charlottesville, Virginia 22901, United States., Shaw JB; Pacific Northwest National Laboratory, Richland, Washington 99354, United States., Shortreed MR; University of Wisconsin-Madison, Madison, Wisconsin 53706, United States., Smith LM; University of Wisconsin-Madison, Madison, Wisconsin 53706, United States., Sobott F; University of Antwerp, 2000 Antwerp, Belgium.; University of Leeds, LS2 9JT Leeds, United Kingdom., Suckau D; Bruker Daltonik GmbH, 28359 Bremen, Germany., Toby T; Northwestern University, Evanston, Illinois 60208-0001, United States., Weisbrod CR; National High Magnetic Field Laboratory, Tallahassee, Florida 32310, United States., Wildburger NC; Washington University School of Medicine, St. Louis, Missouri 63110, United States., Yates JR 3rd; The Scripps Research Institute, La Jolla, California 92037, United States., Yoon SH; University of Maryland, Baltimore, Maryland 21201, United States., Young NL; Baylor College of Medicine, Houston, Texas 77030-3411, United States., Zhou M; Pacific Northwest National Laboratory, Richland, Washington 99354, United States.

Publikováno v: Journal of the American Society for Mass Spectrometry [J Am Soc Mass Spectrom] 2020 Sep 02; Vol. 31 (9), pp. 1783-1802. Date of Electronic Publication: 2020 Aug 19.

Best practices and benchmarks for intact protein analysis for top-down mass spectrometry.

Autor: Donnelly DP; Barnett Institute of Chemical and Biological Analysis and Departments of Chemistry & Chemical Biology and Pharmaceutical Sciences, Northeastern University, Boston, MA, USA., Rawlins CM; Barnett Institute of Chemical and Biological Analysis and Departments of Chemistry & Chemical Biology and Pharmaceutical Sciences, Northeastern University, Boston, MA, USA., DeHart CJ; Departments of Chemistry and Molecular Biosciences and the Proteomics Center of Excellence, Northwestern University, Evanston, IL, USA., Fornelli L; Departments of Chemistry and Molecular Biosciences and the Proteomics Center of Excellence, Northwestern University, Evanston, IL, USA., Schachner LF; Departments of Chemistry and Molecular Biosciences and the Proteomics Center of Excellence, Northwestern University, Evanston, IL, USA., Lin Z; Department of Cell and Regenerative Biology, Department of Chemistry, Human Proteomics Program, University of Wisconsin-Madison, Madison, WI, USA., Lippens JL; Amgen Research, Discovery Attribute Sciences, Amgen, Thousand Oaks, CA, USA., Aluri KC; Barnett Institute of Chemical and Biological Analysis and Departments of Chemistry & Chemical Biology and Pharmaceutical Sciences, Northeastern University, Boston, MA, USA.; Alnylam Pharmaceuticals, Cambridge, MA, USA., Sarin R; Barnett Institute of Chemical and Biological Analysis and Departments of Chemistry & Chemical Biology and Pharmaceutical Sciences, Northeastern University, Boston, MA, USA.; Biogen, Cambridge, MA, USA., Chen B; Department of Cell and Regenerative Biology, Department of Chemistry, Human Proteomics Program, University of Wisconsin-Madison, Madison, WI, USA., Lantz C; Department of Chemistry and Biochemistry, Department of Biological Chemistry, and UCLA/DOE Institute of Genomics and Proteomics, University of California, Los Angeles, Los Angeles, CA, USA., Jung W; Department of Chemistry and Biochemistry, Department of Biological Chemistry, and UCLA/DOE Institute of Genomics and Proteomics, University of California, Los Angeles, Los Angeles, CA, USA., Johnson KR; Barnett Institute of Chemical and Biological Analysis and Departments of Chemistry & Chemical Biology and Pharmaceutical Sciences, Northeastern University, Boston, MA, USA., Koller A; Barnett Institute of Chemical and Biological Analysis and Departments of Chemistry & Chemical Biology and Pharmaceutical Sciences, Northeastern University, Boston, MA, USA., Wolff JJ; Bruker Daltonics, Billerica, MA, USA., Campuzano IDG; Amgen Research, Discovery Attribute Sciences, Amgen, Thousand Oaks, CA, USA., Auclair JR; Biopharmaceutical Analysis Training Laboratory, Northeastern University, Burlington, MA, USA., Ivanov AR; Barnett Institute of Chemical and Biological Analysis and Departments of Chemistry & Chemical Biology and Pharmaceutical Sciences, Northeastern University, Boston, MA, USA., Whitelegge JP; The Pasarow Mass Spectrometry Laboratory, The Jane and Terry Semel Institute for Neuroscience and Human Behavior, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA., Paša-Tolić L; Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA., Chamot-Rooke J; Mass Spectrometry for Biology Unit, Institut Pasteur, USR 2000, CNRS, Paris, France., Danis PO; Eastwoods Consulting, Boylston, MA, USA., Smith LM; Department of Chemistry, Genome Center of Wisconsin, University of Wisconsin-Madison, Madison, WI, USA., Tsybin YO; Spectroswiss, Lausanne, Switzerland., Loo JA; Department of Chemistry and Biochemistry, Department of Biological Chemistry, and UCLA/DOE Institute of Genomics and Proteomics, University of California, Los Angeles, Los Angeles, CA, USA., Ge Y; Department of Cell and Regenerative Biology, Department of Chemistry, Human Proteomics Program, University of Wisconsin-Madison, Madison, WI, USA., Kelleher NL; Departments of Chemistry and Molecular Biosciences and the Proteomics Center of Excellence, Northwestern University, Evanston, IL, USA., Agar JN; Barnett Institute of Chemical and Biological Analysis and Departments of Chemistry & Chemical Biology and Pharmaceutical Sciences, Northeastern University, Boston, MA, USA. j.agar@northeastern.edu.

Publikováno v: Nature methods [Nat Methods] 2019 Jul; Vol. 16 (7), pp. 587-594. Date of Electronic Publication: 2019 Jun 27.

Identification of ceramide-phosphorylethanolamine in oomycete plant pathogens: Pythium ultimum, Phytophthora infestans, and Phytophthora capsici.

Autor: Moreau RA; Eastern Regional Research Center, U.S. Department of Agriculture, Agricultural Research Service, Wyndmoor, Pennsylvania 19038, USA. rmoreau@arserrc.gov, Young DH, Danis PO, Powell MJ, Quinn CJ, Beshah K, Slawecki RA, Dilliplane RL

Publikováno v: Lipids [Lipids] 1998 Mar; Vol. 33 (3), pp. 307-17.

Stable ylides H2CClH, H2CFH, H2COH2, and H2CNH3 studied by neutralization-reionization mass spectrometry.

Autor: Wesdemiotis C, Feng R, Danis PO, Williams ER, McLafferty FW

Publikováno v: Journal of the American Chemical Society [J Am Chem Soc] 1986 Sep 01; Vol. 108 (19), pp. 5847-53.