Zobrazeno 1 - 10
of 168
pro vyhledávání: '"Po, E."'
EDGE COVID-19: A Web Platform to generate submission-ready genomes for SARS-CoV-2 sequencing efforts
Autor:
Lo, Chien-Chi, Shakya, Migun, Davenport, Karen, Flynn, Mark, Gutiérrez, Adán Myers y, Hu, Bin, Li, Po-E, Jackson, Elais Player, Xu, Yan, Chain, Patrick S. G.
Genomics has become an essential technology for surveilling emerging infectious disease outbreaks. A wide range of technologies and strategies for pathogen genome enrichment and sequencing are being used by laboratories worldwide, together with diffe
Externí odkaz:
http://arxiv.org/abs/2006.08058
Autor:
Li, Po-E, Gutiérrez, Adán Myers y, Davenport, Karen, Flynn, Mark, Hu, Bin, Lo, Chien-Chi, Jackson, Elais Player, Shakya, Migun, Xu, Yan, Gans, Jason, Chain, Patrick S. G.
Summary: Polymerase chain reaction-based assays are the current gold standard for detecting and diagnosing SARS-CoV-2. However, as SARS-CoV-2 mutates, we need to constantly assess whether existing PCR-based assays will continue to detect all known vi
Externí odkaz:
http://arxiv.org/abs/2006.04566
Autor:
Ryan Connor, Migun Shakya, David A. Yarmosh, Wolfgang Maier, Ross Martin, Rebecca Bradford, J. Rodney Brister, Patrick S. G. Chain, Courtney A. Copeland, Julia di Iulio, Bin Hu, Philip Ebert, Jonathan Gunti, Yumi Jin, Kenneth S. Katz, Andrey Kochergin, Tré LaRosa, Jiani Li, Po-E Li, Chien-Chi Lo, Sujatha Rashid, Evguenia S. Maiorova, Chunlin Xiao, Vadim Zalunin, Lisa Purcell, Kim D. Pruitt
Publikováno v:
Viruses, Vol 16, Iss 3, p 430 (2024)
Genomic sequencing of clinical samples to identify emerging variants of SARS-CoV-2 has been a key public health tool for curbing the spread of the virus. As a result, an unprecedented number of SARS-CoV-2 genomes were sequenced during the COVID-19 pa
Externí odkaz:
https://doaj.org/article/6e7497a5dbab4a889e0bcc3256afa440
Akademický článek
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Akademický článek
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Autor:
Andrew W Bartlow, Zachary R Stromberg, Cheryl D Gleasner, Bin Hu, Karen W Davenport, Shailja Jakhar, Po-E Li, Molly Vosburg, Madhavi Garimella, Patrick S G Chain, Tracy H Erkkila, Jeanne M Fair, Harshini Mukundan
Publikováno v:
PLOS Global Public Health, Vol 2, Iss 7, p e0000811 (2022)
Early and accurate diagnosis of respiratory pathogens and associated outbreaks can allow for the control of spread, epidemiological modeling, targeted treatment, and decision making-as is evident with the current COVID-19 pandemic. Many respiratory i
Externí odkaz:
https://doaj.org/article/488b16c829c04ceea52e2db631f7b4b4
Autor:
Bin Hu, Shane Canon, Emiley A. Eloe-Fadrosh, Anubhav, Michal Babinski, Yuri Corilo, Karen Davenport, William D. Duncan, Kjiersten Fagnan, Mark Flynn, Brian Foster, David Hays, Marcel Huntemann, Elais K. Player Jackson, Julia Kelliher, Po-E. Li, Chien-Chi Lo, Douglas Mans, Lee Ann McCue, Nigel Mouncey, Christopher J. Mungall, Paul D. Piehowski, Samuel O. Purvine, Montana Smith, Neha Jacob Varghese, Donald Winston, Yan Xu, Patrick S. G. Chain
Publikováno v:
Frontiers in Bioinformatics, Vol 1 (2022)
The nascent field of microbiome science is transitioning from a descriptive approach of cataloging taxa and functions present in an environment to applying multi-omics methods to investigate microbiome dynamics and function. A large number of new too
Externí odkaz:
https://doaj.org/article/dc6956a6b3c54bc0a65af4d854b974d9
Autor:
Tim Mercer, Neil Almond, Michael A. Crone, Patrick S. G. Chain, Alina Deshpande, Deepa Eveleigh, Paul Freemont, Sebastien Fuchs, Russell Garlick, Jim Huggett, Martin Kammel, Po-E Li, Mojca Milavec, Elizabeth M. Marlowe, Denise M. O’Sullivan, Mark Page, Gary A. Pestano, Sara Suliman, Birgitte Simen, John J. Sninsky, Lynne Sopchak, Cristina M. Tato, Peter M. Vallone, Jo Vandesompele, Thomas J. White, Heinz Zeichhardt, Marc Salit
Publikováno v:
Nature Biotechnology. 40:1563-1568
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::45540898bec3110a9f817bedc03ed3bd
https://doi.org/10.1038/s41587-022-01538-1
https://doi.org/10.1038/s41587-022-01538-1
Autor:
Casandra Philipson, Karen Davenport, Logan Voegtly, Chien-Chi Lo, Po-E Li, Yan Xu, Migun Shakya, Regina Cer, Kimberly Bishop-Lilly, Theron Hamilton, Patrick Chain
Publikováno v:
Bio-Protocol, Vol 7, Iss 23 (2017)
Next-generation sequencing (NGS) offers unparalleled resolution for untargeted organism detection and characterization. However, the majority of NGS analysis programs require users to be proficient in programming and command-line interfaces. EDGE bio
Externí odkaz:
https://doaj.org/article/7c4afb2086044850ae7be18d6046f138
Autor:
Sevasti Filippidou, Thomas Junier, Tina Wunderlin, Chien-Chi Lo, Po-E Li, Patrick S. Chain, Pilar Junier
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 13, Iss C, Pp 299-306 (2015)
Microbial diversity studies based on metagenomic sequencing have greatly enhanced our knowledge of the microbial world. However, one caveat is the fact that not all microorganisms are equally well detected, questioning the universality of this approa
Externí odkaz:
https://doaj.org/article/5585f01a5e3b4dfdb5d893d8d281dfbd