Probing the paramyxovirus fusion (F) protein-refolding event from pre- to postfusion by oxidative footprinting

Autor: Poor, Taylor A., Jones, Lisa M., Sood, Amika, Leser, George P., Plasencia, Manolo D., Rempel, Don L., Jardetzky, Theodore S., Woods, Robert J., Gross, Michael L., Lamb, Robert A.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America, 2014 Jun . 111(25), 9030-9030.

Externí odkaz: http://dx.doi.org/10.1073/pnas.1408983111

Resolving and Assigning N-Linked Glycan Structural Isomers from Ovalbumin by IMS-MS

Autor: Plasencia, Manolo D., Isailovic, Dragan, Merenbloom, Samuel I., Mechref, Yehia, Clemmer, David E.

Publikováno v: In Journal of the American Society for Mass Spectrometry 2008 19(11):1706-1715

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

Autor: Iacobucci, Claudio, Piotrowski, Christine, Aebersold, Ruedi, Amaral, Bruno C., Andrews, Philip, Bernfur, Katja, Borchers, Christoph, Brodie, Nicolas I., Bruce, James E., Cao, Yong, Chaignepain, Stéphane, Chavez, Juan D., Claverol, Stéphane, Cox, Jürgen, Davis, Trisha, Degliesposti, Gianluca, Edinger, Nufar, Emanuelsson, Cecilia, Gay, Marina, Götze, Michael, Gomes-Neto, Francisco, Gozzo, Fabio C., Gutierrez, Craig, Haupt, Caroline, Heck, Albert J.R., Herzog, Franz, Huang, Lan, Hoopmann, Michael R., Kalisman, Nir, Klykov, Oleg, Kukačka, Zdeněk, Liu, Fan, MacCoss, Michael J., Mechtler, Karl, Mesika, Ravit, Moritz, Robert L., Nagaraj, Nagarjuna, Nesati, Victor, Neves-Ferreira, Ana G.C., Ninnis, Robert, Novák, Petr, O’Reilly, Francis J., Pelzing, Matthias, Petrotchenko, Evgeniy, Piersimoni, Lolita, Plasencia, Manolo, Pukala, Tara, Rand, Kasper D., Rappsilber, Juri, Reichmann, Dana, Sailer, Carolin, Sarnowski, Chris P., Scheltema, Richard A., Schmidt, Carla, Schriemer, David C., Shi, Yi, Skehel, J. Mark, Slavin, Moriya, Sobott, Frank, Solis-Mezarino, Victor, Stephanowitz, Heike, Stengel, Florian, Stieger, Christian E., Trabjerg, Esben, Trnka, Michael, Vilaseca, Marta, Viner, Rosa, Xiang, Yufei, Yilmaz, Sule, Zelter, Alex, Ziemianowicz, Daniel, Leitner, Alexander, Sinz, Andrea

Publikováno v: Analytical Chemistry, 91 (11)

The number of publications in the field of chemical cross-linking combined with mass spectrometry (XL-MS) to derive constraints for protein three-dimensional structure modeling and to probe protein–protein interactions has increased during the last

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::231ee4116ae174a2a387f90329c012a2
https://hdl.handle.net/20.500.11850/347416

Anal. Chem

Autor: Iacobucci, Claudio, Piotrowski, Christine, Aebersold, Ruedi, Amaral, Bruno C, Andrews, Philip C, Bernfur, Katja, Borchers, Christoph H, Brodie, Nicholas I, Bruce, James E, Cao, Yong, Chaignepain, Stéphane, Chavez, Juan D, Claverol, Stéphane, Cox, Jurgen, Davis, Trisha N, Degliesposti, Gianluca, Dong, Meng-Qiu, Edinger, Nufar, Emanuelsson, Cecilia, Gay, Marina, Götze, Michael, Gomes-Neto, Francisco, Gozzo, Fabio Cesar, Gutierrez, Craig B, Haupt, Caroline, Heck, Albert J R, Herzog, Frank, Huang, Lan, Hoopmann, Michael R, Kalisman, Nir, Klykov, Oleg, Kukačka, Zdeněk, Liu, Fan, MacCoss, Michael J, Mechtler, Karl, Mesika, Ravit, Moritz, Robert L, Nagaraj, Nagarjuna, Nesati, Victor, Neves-Fereira, Ana G C, Ninnis, Robert, Novák, Petr, O'Reilly, Francis J, Pelzing, Matthias, Petrotchenko, Evgeniy V, Piersimoni, Lolita, Plasencia, Manolo, Pukala, Tara L, Rand, Kasper D, Rappsilber, Juri, Reichman, Dana, Sailer, Carolin, Sarnowski, Chris P, Scheltema, Richard A, Schmidt, Carla, Schriemer, David C, Shi, Yi, Skehel, J Mark, Slavin, Moriya, Sobott, Frank, Solis-Mezarino, Victor, Stephanowitz, Heike, Stengel, Florian, Stieger, Christian E, Trabjerg, Esben, Trnka, Michael J, Vilaseca, Marta, Viner, Rosa, Xiang, Yufei, Yılmaz, Şule, Zelter, Alex, Ziemianowicz, Daniel S, Leitner, Alexander, Sinz, Andrea, Afd Biomol.Mass Spect. and Proteomics, Sub Biomol.Mass Spectrometry & Proteom., Biomolecular Mass Spectrometry and Proteomics

Publikováno v: Analytical chemistry
Analytical Chemistry, 91(11), 6953. American Chemical Society
Analytical chemistry, vol 91, iss 11
Analytical Chemistry
Analytical Chemistry, American Chemical Society, In press, 91 (11), pp.6953-6961. ⟨10.1021/acs.analchem.9b00658⟩
Iacobucci, C, Piotrowski, C, Aebersold, R, Amaral, B C, Andrews, P, Bernfur, K, Borchers, C, Brodie, N I, Bruce, J E, Cao, Y, Chaignepain, S, Chavez, J D, Claverol, S, Cox, J, Davis, T, Degliesposti, G, Dong, M Q, Edinger, N, Emanuelsson, C, Gay, M, Götze, M, Gomes-Neto, F, Gozzo, F C, Gutierrez, C, Haupt, C, Heck, A J R, Herzog, F, Huang, L, Hoopmann, M R, Kalisman, N, Klykov, O, Kukačka, Z, Liu, F, Maccoss, M J, Mechtler, K, Mesika, R, Moritz, R L, Nagaraj, N, Nesati, V, Neves-Ferreira, A G C, Ninnis, R, Novák, P, O'Reilly, F J, Pelzing, M, Petrotchenko, E, Piersimoni, L, Plasencia, M, Pukala, T, Rand, K D, Rappsilber, J, Reichmann, D, Sailer, C, Sarnowski, C P, Scheltema, R A, Schmidt, C, Schriemer, D C, Shi, Y, Skehel, J M, Slavin, M, Sobott, F, Solis-Mezarino, V, Stephanowitz, H, Stengel, F, Stieger, C E, Trabjerg, E, Trnka, M, Vilaseca, M, Viner, R, Xiang, Y, Yilmaz, S, Zelter, A, Ziemianowicz, D, Leitner, A & Sinz, A 2019, ' First community-wide, comparative cross-linking mass spectrometry study ', Analytical Chemistry, vol. 91, no. 11, pp. 6953-6961 . https://doi.org/10.1021/acs.analchem.9b00658
Iacobucci, C, Piotrowski, C, Aebersold, R, Amaral, B C, Andrews, P C, Bernfur, K, Borchers, C H, Brodie, N I, Bruce, J E, Cao, Y, Chaignepain, S, Chavez, J D, Claverol, S, Cox, J, Davis, T N, Degliesposti, G, Dong, M-Q, Edinger, N, Emanuelsson, C, Gay, M, Gomes-Neto, F, Gozzo, F C, Gutierrez, C B, Haupt, C, Heck, A J R, Herzog, F, Huang, L, Hoopmann, M R, Kalisman, N, Klykov, O, Kukačka, Z, Liu, F, MacCoss, M J, Mechtler, K, Mesika, R, Moritz, R L, Nagaraj, N, Nesati, V, Neves-Fereira, A G C, Ninnis, R, Novák, P, O'Reilly, F J, Pelzing, M, Petrotchenko, E V, Piersimoni, L, Plasencia, M, Pukala, T L, Rand, K D, Rappsilber, J, Reichman, D, Sailer, C, Sarnowski, C P, Scheltema, R A, Schmidt, C, Schriemer, D C, Shi, Y, Skehel, J M, Slavin, M, Sobott, F, Solis-Mezarino, V, Stephanowitz, H, Stengel, F, Stieger, C E, Trabjerg, E, Trnka, M J, Vilaseca, M, Viner, R, Xiang, Y, Yılmaz, Ş, Zelter, A, Ziemianowicz, D S, Leitner, A & Sinz, A 2019, ' The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study ', Analytical Chemistry, vol. 91, no. 11, pp. 6953-6961 . https://doi.org/10.1021/acs.analchem.9b00658

The number of publications in the field of chemical cross-linking combined with mass spectrometry (XL-MS) to derive constraints for protein three-dimensional structure modeling and to probe protein protein interactions has increased during the last y

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a2ff86a6af05469eaf794b65071d1b5b
https://repository.uantwerpen.be/docman/irua/d5c7ba/160243.pdf

Artificial neural networks for the prediction of peptide drift time in ion mobility mass spectrometry

Autor: Plasencia Manolo, Valentine Steve, Wang Bing, Raghuraman Sriram, Zhang Xiang

Publikováno v: BMC Bioinformatics, Vol 11, Iss 1, p 182 (2010)

Abstract Background There is an increasing usage of ion mobility-mass spectrometry (IMMS) in proteomics. IMMS combines the features of ion mobility spectrometry (IMS) and mass spectrometry (MS). It separates and detects peptide ions on a millisecond

Externí odkaz: https://doaj.org/article/b925548083dd4a9381f1acedd87b3f98