Zobrazeno 1 - 10 of 40 pro vyhledávání: '"Pj, Cock"'
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Editorial & Opinion
The 2016 Bioinformatics Open Source Conference (BOSC).
Autor: Harris NL; Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Cock PJ; The James Hutton Institute, Dundee, DD2 5DA, UK., Chapman B; Bioinformatics Core, Harvard T.H. Chan School of Public Health, Boston, MA, 02115, USA., Fields CJ; High Performance Computing in Biology Group, Carver Biotechnology Center, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA., Hokamp K; Smurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland., Lapp H; Center for Genomic and Computational Biology, Duke University, Durham, NC, 27708, USA., Muñoz-Torres M; Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Wiencko H; Plusvital, NovaUCD, Belfield, Dublin 4, Ireland.
Publikováno v: F1000Research [F1000Res] 2016 Oct 06; Vol. 5. Date of Electronic Publication: 2016 Oct 06 (Print Publication: 2016).
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3
Akademický článek
Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster.
Autor: Vicente CS; NemaLab/ICAAM-Institute of Mediterranean Agricultural and Environmental Sciences, Biology Department, University of Évora, Évora, Portugal. cvicente@uevora.pt.; Department of Environmental Biology, Chubu University, Kasugai, Japan. cvicente@uevora.pt., Nascimento FX; NemaLab/ICAAM-Institute of Mediterranean Agricultural and Environmental Sciences, Biology Department, University of Évora, Évora, Portugal.; Departamento de Microbiologia, Laboratório de Microbiologia do Solo, Universidade Federal de Santa Catarina, Florianópolis, Brazil., Barbosa P; NemaLab/ICAAM-Institute of Mediterranean Agricultural and Environmental Sciences, Biology Department, University of Évora, Évora, Portugal., Ke HM; Biodiversity Research Center, Academia Sinica, Taipei, Taiwan.; Ph.D. Program in Microbial Genomics, National Chung Hsing University and Academia Sinica, Taichung, Taiwan., Tsai IJ; Biodiversity Research Center, Academia Sinica, Taipei, Taiwan., Hirao T; Forest Tree Breeding Center, Forestry and Forest Products Research Institute, Ibaraki, Japan., Cock PJ; Information and Computer Sciences group, The James Hutton Institute, Invergowrie, DD2 5DA, Dundee, UK., Kikuchi T; Division of Parasitology, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan., Hasegawa K; Department of Environmental Biology, Chubu University, Kasugai, Japan., Mota M; NemaLab/ICAAM-Institute of Mediterranean Agricultural and Environmental Sciences, Biology Department, University of Évora, Évora, Portugal.; Departamento de Ciências da Vida, Universidade Lusófona de Humanidades e Tecnologias, Lisbon, Portugal.
Publikováno v: Microbial ecology [Microb Ecol] 2016 Oct; Vol. 72 (3), pp. 669-81. Date of Electronic Publication: 2016 Jul 26.
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4
Akademický článek
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.
Autor: Bolleman JT; Swiss-Prot group, SIB Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel, Servet, Geneva 4, 1211, Switzerland. jerven.bolleman@sib.swiss., Mungall CJ; Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, 94720, CA, US., Strozzi F; CeRSA, Parco Tecnologico Padano, Lodi, 26900, Italy., Baran J; CODAMONO, 5-121 Marion Street, Toronto, M6R 1E6, Ontario, Canada., Dumontier M; Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Room X223, Stanford, 94305-5479, CA, US., Bonnal RJ; Integrative Biology Program, Istituto Nazionale Genetica Molecolare, Milan, Italy., Buels R; University of California, Berkeley, Berkeley, CA, USA., Hoehndorf R; Department of Computer Science, Aberystwyth, SY23 3DB, UK., Fujisawa T; Center for Information Biology, National Institute of Genetics, Research Organization of Information and Systems, 1111 Yata, Mishima, Shizuoka, 411-08540, Japan., Katayama T; Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo, 113-0032, Japan., Cock PJ; The James Hutton Institute, Dundee, DD2 5DA, UK.
Publikováno v: Journal of biomedical semantics [J Biomed Semantics] 2016 Jun 13; Vol. 7, pp. 39. Date of Electronic Publication: 2016 Jun 13.
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5
Akademický článek
The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence.
Autor: Eves-van den Akker S; Division of Plant Sciences, College of Life Sciences, University of Dundee, Dundee, DD1 5EH, UK. s.evesvandenakker@dundee.ac.uk., Laetsch DR; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, EH9 3FL, UK., Thorpe P; Cell and Molecular Sciences Group, Dundee Effector Consortium, James Hutton Institute, Dundee, DD2 5DA, UK., Lilley CJ; Centre for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK., Danchin EG; INRA, University Nice Sophia Antipolis, CNRS, UMR 1355-7254 Institut Sophia Agrobiotech, 06900, Sophia Antipolis, France., Da Rocha M; INRA, University Nice Sophia Antipolis, CNRS, UMR 1355-7254 Institut Sophia Agrobiotech, 06900, Sophia Antipolis, France., Rancurel C; INRA, University Nice Sophia Antipolis, CNRS, UMR 1355-7254 Institut Sophia Agrobiotech, 06900, Sophia Antipolis, France., Holroyd NE; Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SA, UK., Cotton JA; Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SA, UK., Szitenberg A; School of Biological, Biomedical and Environmental Sciences, University of Hull, Hull, HU6 7RX, UK., Grenier E; INRA, UMR1349 IGEPP (Institute for Genetics, Environment and Plant Protection), 35653, Le Rheu, France., Montarry J; INRA, UMR1349 IGEPP (Institute for Genetics, Environment and Plant Protection), 35653, Le Rheu, France., Mimee B; Agriculture and Agri-food Canada, Horticulture Research and Development Centre, 430 Bboul. Gouin, St-Jean-sur-Richelieu, Quebec, J3B 3E6, Canada., Duceppe MO; Agriculture and Agri-food Canada, Horticulture Research and Development Centre, 430 Bboul. Gouin, St-Jean-sur-Richelieu, Quebec, J3B 3E6, Canada., Boyes I; Sidney Laboratory, Canadian Food Inspection Agency (CFIA), 8801 East Saanich Rd, Sidney, BC, V8L 1H3, Canada., Marvin JM; Centre for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK., Jones LM; Centre for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK., Yusup HB; Centre for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK., Lafond-Lapalme J; Agriculture and Agri-food Canada, Horticulture Research and Development Centre, 430 Bboul. Gouin, St-Jean-sur-Richelieu, Quebec, J3B 3E6, Canada., Esquibet M; INRA, UMR1349 IGEPP (Institute for Genetics, Environment and Plant Protection), 35653, Le Rheu, France., Sabeh M; Agriculture and Agri-food Canada, Horticulture Research and Development Centre, 430 Bboul. Gouin, St-Jean-sur-Richelieu, Quebec, J3B 3E6, Canada., Rott M; Sidney Laboratory, Canadian Food Inspection Agency (CFIA), 8801 East Saanich Rd, Sidney, BC, V8L 1H3, Canada., Overmars H; Laboratory of Nematology, Department of Plant Sciences, Wageningen University, Droevendaalsesteeg 1, 6708, PB, Wageningen, The Netherlands., Finkers-Tomczak A; Laboratory of Nematology, Department of Plant Sciences, Wageningen University, Droevendaalsesteeg 1, 6708, PB, Wageningen, The Netherlands., Smant G; Laboratory of Nematology, Department of Plant Sciences, Wageningen University, Droevendaalsesteeg 1, 6708, PB, Wageningen, The Netherlands., Koutsovoulos G; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, EH9 3FL, UK., Blok V; Cell and Molecular Sciences Group, Dundee Effector Consortium, James Hutton Institute, Dundee, DD2 5DA, UK., Mantelin S; Cell and Molecular Sciences Group, Dundee Effector Consortium, James Hutton Institute, Dundee, DD2 5DA, UK., Cock PJ; Information and Computational Sciences Group, James Hutton Institute, Dundee, UK., Phillips W; USDA-ARS Horticultural Crops Research Laboratory, Corvallis, OR, USA., Henrissat B; CNRS UMR 7257, INRA, USC 1408, Aix-Marseille University, AFMB, 13288, Marseille, France.; Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia., Urwin PE; Centre for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK., Blaxter M; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, EH9 3FL, UK., Jones JT; Cell and Molecular Sciences Group, Dundee Effector Consortium, James Hutton Institute, Dundee, DD2 5DA, UK.; School of Biology, University of St Andrews, North Haugh, St Andrews, KY16 9TZ, UK.
Publikováno v: Genome biology [Genome Biol] 2016 Jun 10; Vol. 17 (1), pp. 124. Date of Electronic Publication: 2016 Jun 10.
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6
Akademický článek
The genome and genetics of a high oxidative stress tolerant Serratia sp. LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus.
Autor: Vicente CS; NemaLab/ICAAM - Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Departamento de Biologia, Universidade de Évora, Núcleo da Mitra, Ap. 94, 7002-554, Évora, Portugal.; Department of Environmental Biology, College of Bioscience & Biotechnology, Chubu University, 1200 Matsumoto, Kasugai, Aichi, 487-8501, Japan., Nascimento FX; NemaLab/ICAAM - Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Departamento de Biologia, Universidade de Évora, Núcleo da Mitra, Ap. 94, 7002-554, Évora, Portugal., Ikuyo Y; Department of Environmental Biology, College of Bioscience & Biotechnology, Chubu University, 1200 Matsumoto, Kasugai, Aichi, 487-8501, Japan., Cock PJ; Information and Computational Sciences group (PJAC), The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK., Mota M; NemaLab/ICAAM - Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Departamento de Biologia, Universidade de Évora, Núcleo da Mitra, Ap. 94, 7002-554, Évora, Portugal.; Departamento de Ciências da Vida, Universidade Lusófona de Humanidades e Tecnologias, Lisboa, Portugal., Hasegawa K; Department of Environmental Biology, College of Bioscience & Biotechnology, Chubu University, 1200 Matsumoto, Kasugai, Aichi, 487-8501, Japan. koichihasegawa@isc.chubu.ac.jp.
Publikováno v: BMC genomics [BMC Genomics] 2016 Apr 23; Vol. 17, pp. 301. Date of Electronic Publication: 2016 Apr 23.
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7
Akademický článek
Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets.
Autor: Thorpe P; Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.; Dundee Effector Consortium, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK., Cock PJ; Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.; Dundee Effector Consortium, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK., Bos J; Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK. j.bos@dundee.ac.uk.; Dundee Effector Consortium, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK. j.bos@dundee.ac.uk.; College of Life Sciences, University of Dundee, Dundee, UK. j.bos@dundee.ac.uk.
Publikováno v: BMC genomics [BMC Genomics] 2016 Mar 02; Vol. 17, pp. 172. Date of Electronic Publication: 2016 Mar 02.
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8
Akademický článek
The 2015 Bioinformatics Open Source Conference (BOSC 2015).
Autor: Harris NL; Lawrence Berkeley National Laboratory, Berkeley, California, United States of America., Cock PJ; The James Hutton Institute, Dundee, United Kingdom., Lapp H; Center for Genomic and Computational Biology, Duke University, Durham, North Carolina, United States of America., Chapman B; Bioinformatics Core, Harvard School of Public Health, Boston, Massachusetts, United States of America., Davey R; The Genome Analysis Centre, Norwich, United Kingdom., Fields C; National Center for Supercomputing Applications, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America., Hokamp K; Smurfit Institute of Genetics, Trinity College Dublin, Dublin, Ireland., Munoz-Torres M; Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.
Publikováno v: PLoS computational biology [PLoS Comput Biol] 2016 Feb 25; Vol. 12 (2), pp. e1004691. Date of Electronic Publication: 2016 Feb 25 (Print Publication: 2016).
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9
Akademický článek
Gene expression changes in diapause or quiescent potato cyst nematode, Globodera pallida, eggs after hydration or exposure to tomato root diffusate.
Autor: Palomares-Rius JE; Institute for Sustainble Agriculture-CSIC, Córdoba, Spain; Cell and Molecular Sciences, The James Hutton Institute, Dundee, United Kingdom., Hedley P; Cell and Molecular Sciences, The James Hutton Institute , Dundee , United Kingdom., Cock PJ; Information and Computational Sciences, The James Hutton Institute , Dundee , United Kingdom., Morris JA; Cell and Molecular Sciences, The James Hutton Institute , Dundee , United Kingdom., Jones JT; Cell and Molecular Sciences, The James Hutton Institute, Dundee, United Kingdom; Department of Biology, University of St. Andrews, St Andrews, United Kingdom., Blok VC; Cell and Molecular Sciences, The James Hutton Institute , Dundee , United Kingdom.
Publikováno v: PeerJ [PeerJ] 2016 Feb 04; Vol. 4, pp. e1654. Date of Electronic Publication: 2016 Feb 04 (Print Publication: 2016).
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10
Akademický článek
Identification and characterization of parasitism genes from the pinewood nematode Bursaphelenchus xylophilus reveals a multilayered detoxification strategy.
Autor: Espada M; NemaLab/ICAAM-Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Universidade de Évora, Núcleo da Mitra, Ap. 94, 7002-554, Évora, Portugal.; Cell and Molecular Sciences Group/Information and Computer Sciences Group (PJAC), The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK., Silva AC; NemaLab/ICAAM-Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Universidade de Évora, Núcleo da Mitra, Ap. 94, 7002-554, Évora, Portugal.; Cell and Molecular Sciences Group/Information and Computer Sciences Group (PJAC), The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.; Biology Department, University of Gent, KL Ledeganckstraat 35, B9000, Gent, Belgium., Eves van den Akker S; College of Life Sciences, University of Dundee, Dundee, DD1 5EH, UK., Cock PJ; Cell and Molecular Sciences Group/Information and Computer Sciences Group (PJAC), The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK., Mota M; NemaLab/ICAAM-Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Universidade de Évora, Núcleo da Mitra, Ap. 94, 7002-554, Évora, Portugal., Jones JT; Cell and Molecular Sciences Group/Information and Computer Sciences Group (PJAC), The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.; Biology Department, University of Gent, KL Ledeganckstraat 35, B9000, Gent, Belgium.; School of Biology, University of St Andrews, North Haugh, St Andrews, KY16 9TZ, UK.
Publikováno v: Molecular plant pathology [Mol Plant Pathol] 2016 Feb; Vol. 17 (2), pp. 286-95. Date of Electronic Publication: 2015 Jun 16.
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