The Amborella Genome and the Evolution of Flowering Plants

Autor: Albert, Va, Barbazuk, Wb, Depamphilis, Cw, Der, Jp, Leebens Mack, J, Ma, H, Palmer, Jd, Rounsley, S, Sankoff, D, Schuster, Sc, Soltis, De, Soltis, Ps, Wessler, Sr, Wing, Ra, Ammiraju, Js, Chamala, S, Chanderbali, As, Determann, R, Ralph, P, Talag, J, Tomsho, L, Walts, B, Wanke, S, Chang, Th, Lan, T, Arikit, S, Axtell, Mj, Ayyampalayam, S, Burnette JM 3rd, DE PAOLI, Emanuele, Estill, Jc, Farrell, Np, Harkess, A, Jiao, Y, Liu, K, Mei, W, Meyers, Bc, Shahid, S, Wafula, E, Zhai, J, Zhang, X, Carretero Paulet, L, Lyons, E, Tang, H, Zheng, C, Altman, Ns, Chen, F, Chen, Jq, Chiang, V, De Paoli, E, Fogliani, B, Guo, C, Harholt, J, Job, C, Job, D, Kim, S, Kong, H, Li, G, Li, L, Liu, J, Park, J, Qi, X, Rajjou, L, Burtet Sarramegna, V, Sederoff, R, Sun, Yh, Ulvskov, P, Villegente, M, Xue, Jy, Yeh, Tf, Yu, X, Acosta, Jj, Bruenn, Ra, de Kochko, A, Herrera Estrella LR, Ibarra Laclette, E, Kirst, M, Pissis, Sp, Poncet, V, Tomsho, L.

Publikováno v: Science
Science, American Association for the Advancement of Science, 2013, 342 (6165), pp.1-10. ⟨10.1126/science.1241089⟩

Shaping Plant Evolution Amborella trichopoda is understood to be the most basal extant flowering plant and its genome is anticipated to provide insights into the evolution of plant life on Earth (see the Perspective by Adams ). To validate and assemb

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cab72ffe2f9976c19e4174bb2eb33735
https://hal.archives-ouvertes.fr/hal-01204035

A New Class of Searchable and Provably Highly Compressible String Transformations

Autor: Giancarlo R., Manzini G., Rosone G., Sciortino M.

The Burrows-Wheeler Transform is a string transformation that plays a fundamental role for the design of self-indexing compressed data structures. Over the years, researchers have successfully extended this transformation outside the domains of strin

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::55d5b7749a520c5dbeb1b9138c33927d
http://arxiv.org/abs/1902.01280

Pangenome comparison via ED strings.

Autor: Gabory E; Centrum Wiskunde & Informatica, Amsterdam, Netherlands., Mwaniki MN; Department of Computer Science, University of Pisa, Pisa, Italy., Pisanti N; Department of Computer Science, University of Pisa, Pisa, Italy., Pissis SP; Centrum Wiskunde & Informatica, Amsterdam, Netherlands.; Department of Computer Science, Vrije Universiteit, Amsterdam, Netherlands., Radoszewski J; Institute of Informatics, University of Warsaw, Warsaw, Poland., Sweering M; Centrum Wiskunde & Informatica, Amsterdam, Netherlands., Zuba W; Centrum Wiskunde & Informatica, Amsterdam, Netherlands.

Publikováno v: Frontiers in bioinformatics [Front Bioinform] 2024 Sep 26; Vol. 4, pp. 1397036. Date of Electronic Publication: 2024 Sep 26 (Print Publication: 2024).

Palidis: fast discovery of novel insertion sequences.

Autor: Carr VR; Parasites and Microbes, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.; Centre for Host-Microbiome Interactions, Faculty of Dentistry, Oral & Craniofacial Sciences, King's College London, SE1 9RT, UK., Pissis SP; Centrum Wiskunde en Informatica, Amsterdam, Netherlands.; Vrije Universiteit, Amsterdam, Netherlands., Mullany P; Department of Microbial Diseases, Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, UK., Shoaie S; Centre for Host-Microbiome Interactions, Faculty of Dentistry, Oral & Craniofacial Sciences, King's College London, SE1 9RT, UK.; Science for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, SE-171 21, Sweden., Gomez-Cabrero D; Centre for Host-Microbiome Interactions, Faculty of Dentistry, Oral & Craniofacial Sciences, King's College London, SE1 9RT, UK.; Bioscience Program, Bioengineering Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia.; Translational Bioinformatics Unit, Navarrabiomed, Complejo Hospitalario de Navarra (CHN), Universidad Pública de Navarra (UPNA), IdiSNA, Pamplona, Spain., Moyes DL; Centre for Host-Microbiome Interactions, Faculty of Dentistry, Oral & Craniofacial Sciences, King's College London, SE1 9RT, UK.

Publikováno v: Microbial genomics [Microb Genom] 2023 Mar; Vol. 9 (3).

IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences.

Autor: Alamro H; Department of Informatics, King's College London, 30 Aldwych, London, UK.; Department of Information Systems, Princess Nourah bint Abdulrahman University, Riyadh, Kingdom of Saudi Arabia., Alzamel M; Department of Informatics, King's College London, 30 Aldwych, London, UK.; Computer Science Department, King Saud University, Riyadh, Kingdom of Saudi Arabia., Iliopoulos CS; Department of Informatics, King's College London, 30 Aldwych, London, UK., Pissis SP; Centrum Wiskunde & Informatica, Amsterdam, The Netherlands. solon.pissis@cwi.nl.; Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. solon.pissis@cwi.nl., Watts S; Department of Informatics, King's College London, 30 Aldwych, London, UK.

Publikováno v: BMC bioinformatics [BMC Bioinformatics] 2021 Feb 06; Vol. 22 (1), pp. 51. Date of Electronic Publication: 2021 Feb 06.