Zobrazeno 1 - 3
of 3
pro vyhledávání: '"Piotr Blaszynski"'
Publikováno v:
Applied Sciences, Vol 12, Iss 12, p 5898 (2022)
Current state-of-the-art parallel codes used to calculate the maximum number of pairs for a given RNA sequence by means of Nussinov’s algorithm do not allow for achieving speedup close up to the number of the processors used for execution of those
Externí odkaz:
https://doaj.org/article/c57769b11f594a2986cc57d8e950b782
Publikováno v:
Mathematics, Vol 12, Iss 5, p 728 (2024)
This paper focuses on optimizing the Zuker RNA folding algorithm, a bioinformatics task with non-serial polyadic dynamic programming and non-uniform loop dependencies. The intricate dependence pattern is represented using affine formulas, enabling th
Externí odkaz:
https://doaj.org/article/7975bc3a5f8347cc9b633a3a3eaec306
Autor:
Piotr Błaszyński, Włodzimierz Bielecki
Publikováno v:
Eng, Vol 4, Iss 1, Pp 507-525 (2023)
Many current bioinformatics algorithms have been implemented in parallel programming code. Some of them have already reached the limits imposed by Amdahl’s law, but many can still be improved. In our paper, we present an approach allowing us to gen
Externí odkaz:
https://doaj.org/article/fce06696dd2c48ad8b16ad4ae9889659