Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service

Autor: Marco Antonio Tangaro, Pietro Mandreoli, Matteo Chiara, Giacinto Donvito, Marica Antonacci, Antonio Parisi, Angelica Bianco, Angelo Romano, Daniela Manila Bianchi, Davide Cangelosi, Paolo Uva, Ivan Molineris, Vladimir Nosi, Raffaele A. Calogero, Luca Alessandri, Elena Pedrini, Marina Mordenti, Emanuele Bonetti, Luca Sangiorgi, Graziano Pesole, Federico Zambelli

Publikováno v: BMC Bioinformatics, Vol 22, Iss S15, Pp 1-20 (2021)

Abstract Background Improving the availability and usability of data and analytical tools is a critical precondition for further advancing modern biological and biomedical research. For instance, one of the many ramifications of the COVID-19 global p

Externí odkaz: https://doaj.org/article/e5ee31659111446fa3d69e4960d6a9ee

The Laniakea Dashboard and Storage Encryption Components: A Foundation for Developing On-Demand Cloud Services for Life Science

Autor: Marco Antonio Tangaro, Marica Antonacci, Pietro Mandreoli, Daniele Colombo, Nadina Foggetti, Giacinto Donvito, Graziano Pesole, Federico Zambelli

Publikováno v: Communications in Computer and Information Science ISBN: 9783031253799

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7f8d0e4c120ec84a93f97f99cabbeb57
https://hdl.handle.net/2434/953140

Using 'Galaxy-rCASC': A Public Galaxy Instance for Single-Cell RNA-Seq Data Analysis

Autor: Pietro, Mandreoli, Luca, Alessandri, Raffaele A, Calogero, Marco Antonio, Tangaro, Federico, Zambelli

Publikováno v: Methods in molecular biology (Clifton, N.J.). 2584

rCASC is a modular workflow providing an integrated environment for single-cell RNA-seq (scRNA-Seq) data analysis exploiting Docker containers to achieve functional and computational reproducibility. It was initially developed as an R package usable

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::2d3811369e33eb372922a048a90131c2
https://pubmed.ncbi.nlm.nih.gov/36495458

aScan: A Novel Method for the Study of Allele Specific Expression in Single Individuals

Autor: Federico Zambelli, Giulio Pavesi, Graziano Pesole, Pietro Mandreoli, Erika Ferrandi, Matteo Chiara, Marco Antonio Tangaro

Publikováno v: Journal of molecular biology. 433(11)

In diploid organisms, two copies of each allele are normally inherited from parents. Paternal and maternal alleles can be regulated and expressed unequally, which is referred to as allele-specific expression (ASE). In this work, we present aScan, a n

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6dac2a8e6d2ec2a9740e29b1fc753ff9
https://pubmed.ncbi.nlm.nih.gov/33508309

Laniakea: an open solution to provide Galaxy 'on-demand' instances over heterogeneous cloud infrastructures

Autor: Matteo Chiara, Marica Antonacci, Graziano Pesole, Pietro Mandreoli, Giacinto Donvito, Marco Antonio Tangaro, Federico Zambelli

Publikováno v: bioRxiv
GigaScience
Giga science 9 (2020). doi:10.1093/gigascience/giaa033
info:cnr-pdr/source/autori:Tangaro M.A.; Donvito G.; Antonacci M.; Chiara M.; Mandreoli P.; Pesole G.; Zambelli F./titolo:Laniakea: An open solution to provide Galaxy "on-demand" instances over heterogeneous cloud infrastructures/doi:10.1093%2Fgigascience%2Fgiaa033/rivista:Giga science/anno:2020/pagina_da:/pagina_a:/intervallo_pagine:/volume:9

BackgroundGalaxy is rapidly becoming the de facto standard among workflow managers for bioinformatics. A rich feature set, its overall flexibility, and a thriving community of enthusiastic users are among the main factors contributing to the populari

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::27d4c6f1b13ee07d7b651d5ced3ada83