A small number of early introductions seeded widespread transmission of SARS-CoV-2 in Québec, Canada

Autor: Carmen Lía Murall, Eric Fournier, Jose Hector Galvez, Arnaud N’Guessan, Sarah J. Reiling, Pierre-Olivier Quirion, Sana Naderi, Anne-Marie Roy, Shu-Huang Chen, Paul Stretenowich, Mathieu Bourgey, David Bujold, Romain Gregoire, Pierre Lepage, Janick St-Cyr, Patrick Willet, Réjean Dion, Hugues Charest, Mark Lathrop, Michel Roger, Guillaume Bourque, Jiannis Ragoussis, B. Jesse Shapiro, Sandrine Moreira

Publikováno v: Genome Medicine, Vol 13, Iss 1, Pp 1-17 (2021)

Abstract Background Québec was the Canadian province most impacted by COVID-19, with 401,462 cases as of September 24th, 2021, and 11,347 deaths due mostly to a very severe first pandemic wave. In April 2020, we assembled the Coronavirus Sequencing

Externí odkaz: https://doaj.org/article/07d52d1b37c243e1b6ccd4de7e2aeefc

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.

Autor: Krzysztof J Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capotă, M Mallar Chakravarty, Nathan W Churchill, Alexander Li Cohen, R Cameron Craddock, Gabriel A Devenyi, Anders Eklund, Oscar Esteban, Guillaume Flandin, Satrajit S Ghosh, J Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher J Steele, Pierre-Olivier Quirion, Robert E Smith, Stephen C Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, Russell A Poldrack

Publikováno v: PLoS Computational Biology, Vol 13, Iss 3, p e1005209 (2017)

The rate of progress in human neurosciences is limited by the inability to easily apply a wide range of analysis methods to the plethora of different datasets acquired in labs around the world. In this work, we introduce a framework for creating, tes

Externí odkaz: https://doaj.org/article/3104ecfd7dcb4833982f436f752842e0

Spatial correspondence of spinal cord white matter tracts using diffusion tensor imaging, fibre tractography, and atlas-based segmentation

Autor: Julien Cohen-Adad, Stewart D. McLachlin, Cari M. Whyne, Phoenix Wilkie, Pierre-Olivier Quirion, Vignesh Sivan, Michael Hardisty, Jason Leung

Publikováno v: Neuroradiology. 63:373-380

Neuroimaging provides great utility in complex spinal surgeries, particularly when anatomical geometry is distorted by pathology (tumour, degeneration, etc.). Spinal cord MRI diffusion tractography can be used to generate streamlines; however, it is

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::6227b1c5d694f476aa261f26b698f170
https://doi.org/10.1007/s00234-021-02635-9

Mutations associated with neuropsychiatric conditions delineate functional brain connectivity dimensions contributing to autism and schizophrenia

Autor: Carrie E. Bearden, Guillaume Dumas, Aurélie Labbe, Pierre-Olivier Quirion, Stéphane Potvin, Thomas Bourgeron, Clara Moreau, Emmanuel Stip, Kumar Kuldeep, Guillaume Huguet, Amy Lin, Sebastian Urchs, Pierre Bellec, Stéphanie Grot, Alan C. Evans, Catherine Schramm, Sébastien Jacquemont, David Luck, Leila Kushan, Adrianna Mendrek, Pierre Orban, Elise Douard

Publikováno v: Nature Communications
Nature Communications, 2020, 11 (1), pp.5272. ⟨10.1038/s41467-020-18997-2⟩
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Nature Communications, Nature Publishing Group, 2020, 11 (1), pp.5272. ⟨10.1038/s41467-020-18997-2⟩
Nature communications, vol 11, iss 1

16p11.2 and 22q11.2 Copy Number Variants (CNVs) confer high risk for Autism Spectrum Disorder (ASD), schizophrenia (SZ), and Attention-Deficit-Hyperactivity-Disorder (ADHD), but their impact on functional connectivity (FC) remains unclear. Here we re

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::86213ff5a2b42da49ffc5affd0ac7083
https://hal-pasteur.archives-ouvertes.fr/pasteur-03325396/file/s41467-020-18997-2.pdf

Software architectures to integrate workflow engines in science gateways

Autor: Pierre-Olivier Quirion, Vladimir Korkhov, Reza Adalat, Silvia D. Olabarriaga, Pierre Bellec, Tristan Glatard, Rafael Ferreira da Silva, Najmeh Khalili-Mahani, Samir Das, Natacha Beck, Sorina Camarasu-Pop, Pierre Rioux, M. Rousseau, Alan C. Evans

Publikováno v: FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF GRID COMPUTING AND ESCIENCE, 75, 239-255. Elsevier
Future Generation Computer Systems
Future Generation Computer Systems, Elsevier, 2017, 75, pp.239-255. ⟨10.1016/j.future.2017.01.005⟩

Science gateways often rely on workflow engines to execute applications on distributed infrastructures. We investigate six software architectures commonly used to integrate workflow engines into science gateways. In tight integration, the workflow en

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::02ad28965bfb2989a5567bf5287d2cc6
https://doi.org/10.1016/j.future.2017.01.005