Zobrazeno 1 - 10
of 15
pro vyhledávání: '"Pierre Etienne Cholley"'
Autor:
Mohamed-Ashick M. Saleem, Marco-Antonio Mendoza-Parra, Pierre-Etienne Cholley, Matthias Blum, Hinrich Gronemeyer
Publikováno v:
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-9 (2017)
Abstract Background Exponentially increasing numbers of NGS-based epigenomic datasets in public repositories like GEO constitute an enormous source of information that is invaluable for integrative and comparative studies of gene regulatory mechanism
Externí odkaz:
https://doaj.org/article/2c1efb53551044dab1f3c9cc062fc74d
Autor:
Marco-Antonio Mendoza-Parra, Vincent Saravaki, Pierre-Etienne Cholley, Matthias Blum, Benjamin Billoré, Hinrich Gronemeyer
Publikováno v:
F1000Research, Vol 5 (2016)
We have established a certification system for antibodies to be used in chromatin immunoprecipitation assays coupled to massive parallel sequencing (ChIP-seq). This certification comprises a standardized ChIP procedure and the attribution of a numeri
Externí odkaz:
https://doaj.org/article/ab5291d420e24b888b4e788ae92b8f7c
Autor:
Kelle C Freel, Martin C Krueger, Julien Farasin, Céline Brochier-Armanet, Valérie Barbe, Jeremy Andrès, Pierre-Etienne Cholley, Marie-Agnès Dillies, Bernd Jagla, Sandrine Koechler, Yann Leva, Ghislaine Magdelenat, Frédéric Plewniak, Caroline Proux, Jean-Yves Coppée, Philippe N Bertin, Hermann J Heipieper, Florence Arsène-Ploetze
Publikováno v:
PLoS ONE, Vol 10, Iss 9, p e0139011 (2015)
Acid mine drainage (AMD) is a highly toxic environment for most living organisms due to the presence of many lethal elements including arsenic (As). Thiomonas (Tm.) bacteria are found ubiquitously in AMD and can withstand these extreme conditions, in
Externí odkaz:
https://doaj.org/article/1f3f23c13e72429cbe99007c29d3b46c
Autor:
Mattias Uhlen, Shan Huang, Thomas Svensson, Pınar Kocabaş, Jonathan L. Robinson, Mihail Anton, Hao Wang, Johan Gustafsson, Johan Gobom, Pierre-Etienne Cholley, Jens Nielsen, Henrik Zetterberg
Publikováno v:
Wang, H, Robinson, J L, Kocabas, P, Gustafsson, J, Anton, M, Cholley, P-E, Huang, S, Gobom, J, Svensson, T, Uhlen, M, Zetterberg, H & Nielsen, J 2021, ' Genome-scale metabolic network reconstruction of model animals as a platform for translational research ', Proceedings of the National Academy of Sciences of the United States of America, vol. 118, no. 30, e2102344118 . https://doi.org/10.1073/pnas.2102344118
Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences of the United States of America
Significance Animal models and genome-scale metabolic models (GEMs) are two important tools for studying human diseases, but a proper integration of the two is lacking. To bridge them, we developed a reproducible and systematic framework by which the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::92af6dff02b13d4bad687b44724a9b6a
https://orbit.dtu.dk/en/publications/534c2a92-5e5e-41e7-9d52-ba7c208fe4ae
https://orbit.dtu.dk/en/publications/534c2a92-5e5e-41e7-9d52-ba7c208fe4ae
Autor:
Jonathan L. Robinson, Jens Nielsen, Eduard J. Kerkhoven, Alex Hedin, L. Thomas Svensson, Lena Hansson, Bernhard O. Palsson, Virinchi Billa, Angelo Limeta, Pierre Etienne Cholley, Mathias Uhlén, Avlant Nilsson, Hao Wang, Adil Mardinoglu, Raphael Ferreira, Iván Domenzain, Mihail Anton, Daniel Cook, Pınar Kocabaş, Johan Gustafsson
Publikováno v:
Robinson, J L, Kocabaş, P, Wang, H, Cholley, P E, Cook, D, Nilsson, A, Anton, M, Ferreira, R, Domenzain, I, Billa, V, Limeta, A, Hedin, A, Gustafsson, J, Kerkhoven, E J, Svensson, L T, Palsson, B O, Mardinoglu, A, Hansson, L, Uhlén, M & Nielsen, J 2020, ' An atlas of human metabolism ', Science Signaling, vol. 13, no. 624, eaaz1482 . https://doi.org/10.1126/scisignal.aaz1482
Science signaling, vol 13, iss 624
Sci Signal
Science Signaling
Science signaling, vol 13, iss 624
Sci Signal
Science Signaling
Genome-scale metabolic models (GEMs) are valuable tools to study metabolism and provide a scaffold for the integrative analysis of omics data. Researchers have developed increasingly comprehensive human GEMs, but the disconnect among different model
Autor:
Hinrich Gronemeyer, Marco Antonio Mendoza-Parra, Pierre-Etienne Cholley, Matthias Blum, Valeriya Malysheva, Samuel Nicaise, Julien Moehlin
Publikováno v:
Life Science Alliance
Life Science Alliance, Life Science Alliance LLC, 2019, 3 (1), pp.e201900546. ⟨10.26508/lsa.201900546⟩
Life Science Alliance, 2019, 3 (1), pp.e201900546. ⟨10.26508/lsa.201900546⟩
Life Science Alliance, Life Science Alliance LLC, 2019, 3 (1), pp.e201900546. ⟨10.26508/lsa.201900546⟩
Life Science Alliance, 2019, 3 (1), pp.e201900546. ⟨10.26508/lsa.201900546⟩
This study presents qcGenomics, a user-friendly online resource for ultrafast retrieval, visualization, and comparative analysis of tens of thousands of genomics datasets to gain new functional insight from global or focused multi-dimensional data in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::78b5e59211e1101b4fdbe588a92906f4
https://hal.archives-ouvertes.fr/hal-02401324
https://hal.archives-ouvertes.fr/hal-02401324
Autor:
Samuel Nicaise, Marco Antonio Mendoza-Parra, Hinrich Gronemeyer, Vincent Zilliox, Alexia Rohmer, Pierre-Etienne Cholley, Julien Moehlin
Publikováno v:
npj Systems Biology and Applications
npj Systems Biology and Applications, 2018, 4, ⟨10.1038/s41540-018-0066-z⟩
npj Systems Biology and Applications, Nature Research, 2018, 4, ⟨10.1038/s41540-018-0066-z⟩
NPJ Systems Biology and Applications
npj Systems Biology and Applications, Vol 4, Iss 1, Pp 1-5 (2018)
npj Systems Biology and Applications, 2018, 4, ⟨10.1038/s41540-018-0066-z⟩
npj Systems Biology and Applications, Nature Research, 2018, 4, ⟨10.1038/s41540-018-0066-z⟩
NPJ Systems Biology and Applications
npj Systems Biology and Applications, Vol 4, Iss 1, Pp 1-5 (2018)
Complex organisms originate from and are maintained by the information encoded in the genome. A major challenge of systems biology is to develop algorithms that describe the dynamic regulation of genome functions from large omics datasets. Here, we d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cd818c1cb74b0c2800166a5d503428de
https://hal.science/hal-02364385/file/Cholley_et_al-2018-npj_Systems_Biology_and_Applications.pdf
https://hal.science/hal-02364385/file/Cholley_et_al-2018-npj_Systems_Biology_and_Applications.pdf
Autor:
Hinrich Gronemeyer, Matthias Blum, Pierre-Etienne Cholley, Mohamed-Ashick M. Saleem, Marco Antonio Mendoza-Parra
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, 2017, 18 (1), ⟨10.1186/s12859-017-1655-3⟩
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-9 (2017)
BMC Bioinformatics, 2017, 18 (1), ⟨10.1186/s12859-017-1655-3⟩
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-9 (2017)
Background Exponentially increasing numbers of NGS-based epigenomic datasets in public repositories like GEO constitute an enormous source of information that is invaluable for integrative and comparative studies of gene regulatory mechanisms. One of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f8be2de526eeca409188f6eaead22b47
https://hal.science/hal-03677828
https://hal.science/hal-03677828
Autor:
Marco Antonio, Mendoza-Parra, Mohamed-Ashick M, Saleem, Matthias, Blum, Pierre-Etienne, Cholley, Hinrich, Gronemeyer
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 1418
The combination of massive parallel sequencing with a variety of modern DNA/RNA enrichment technologies provides means for interrogating functional protein-genome interactions (ChIP-seq), genome-wide transcriptional activity (RNA-seq; GRO-seq), chrom
Autor:
Mohamed-Ashick M. Saleem, Marco Antonio Mendoza-Parra, Pierre-Etienne Cholley, Hinrich Gronemeyer, Matthias Blum
Publikováno v:
Methods in Molecular Biology
Methods in Molecular Biology, 1418, Humana Press, pp.243-65, 2016, Methods in Molecular Biology, ⟨10.1007/978-1-4939-3578-9_13⟩
Methods in Molecular Biology ISBN: 9781493935765
Statistical Genomics
Methods in Molecular Biology, 1418, Humana Press, pp.243-65, 2016, Methods in Molecular Biology, ⟨10.1007/978-1-4939-3578-9_13⟩
Methods in Molecular Biology ISBN: 9781493935765
Statistical Genomics
The combination of massive parallel sequencing with a variety of modern DNA/RNA enrichment technologies provides means for interrogating functional protein-genome interactions (ChIP-seq), genome-wide transcriptional activity (RNA-seq; GRO-seq), chrom
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::227fed2e8792f05d075f8e5ecdc3ea90
https://hal.archives-ouvertes.fr/hal-03688238
https://hal.archives-ouvertes.fr/hal-03688238