Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Pierre Boutillier"'
Publikováno v:
Systems Biology Modelling and Analysis. :69-126
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a10bf62ee6e6f55616e65bf819bf596f
https://doi.org/10.1002/9781119716600.ch4
https://doi.org/10.1002/9781119716600.ch4
Publikováno v:
SASB
Rule-based languages, such as Kappa and BNGL, allow for the description of very combinatorial models of interactions between proteins. A huge (when not infinite) number of different kinds of bio-molecular compounds may arise due to proteins with mult
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5dc693fd6e1562800f32953fe965c90e
https://doi.org/10.1016/j.entcs.2020.06.003
https://doi.org/10.1016/j.entcs.2020.06.003
Publikováno v:
Genetics
Genetics, 2021, 219 (4), ⟨10.1093/genetics/iyab161⟩
Genetics, 2021, 219 (4), ⟨10.1093/genetics/iyab161⟩
During their dispersals over the last 100,000 years, modern humans have been exposed to a large variety of environments, resulting in genetic adaptation. While genome-wide scans for the footprints of positive Darwinian selection have increased knowle
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::80862324bfbd2e1c447da8e571c93142
https://europepmc.org/articles/PMC8664576/
https://europepmc.org/articles/PMC8664576/
Autor:
Ovidiu Radulescu, Pierre Boutillier, Nathalie Théret, Jérôme Feret, Pierre Vignet, Arran Hodgkinson
Publikováno v:
Extracellular Matrix Omics ISBN: 9783030583293
Extracellular Matrix Omics
Sylvie Ricard-Blum. Extracellular Matrix Omics, 7, Springer, pp.17, 2020, Biology of Extracellular Matrix, 978-3-030-58329-3. ⟨10.1007/978-3-030-58330-9_10⟩
Extracellular Matrix Omics
Sylvie Ricard-Blum. Extracellular Matrix Omics, 7, Springer, pp.17, 2020, Biology of Extracellular Matrix, 978-3-030-58329-3. ⟨10.1007/978-3-030-58330-9_10⟩
International audience; The extracellular matrix (ECM) is the most important regulator of cell-cell communication within tissues. ECM is a complex structure, made up of a wide variety of molecules including proteins, proteglycans and glycoaminoglycan
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2d06688bec711b2ccaaf5f96e18c60a3
https://doi.org/10.1007/978-3-030-58330-9_10
https://doi.org/10.1007/978-3-030-58330-9_10
Over the last 100,000 years, humans have spread across the globe and encountered a highly diverse set of environments to which they have had to adapt. Genome-wide scans of selection are powerful to detect selective sweeps. However, because of unknown
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3eefab98514e9ddd56e3fbdb35c4d68c
Publikováno v:
ESOP 2019-28th European Symposium on Programming
ESOP 2019-28th European Symposium on Programming, Apr 2019, Prague, Czech Republic. pp.176-204, ⟨10.1007/978-3-030-17184-1_7⟩
Programming Languages and Systems ISBN: 9783030171834
ESOP
ESOP 2019-28th European Symposium on Programming, Apr 2019, Prague, Czech Republic. pp.176-204, ⟨10.1007/978-3-030-17184-1_7⟩
Programming Languages and Systems ISBN: 9783030171834
ESOP
Site-graph rewriting languages, such as Kappa or BNGL, offer parsimonious ways to describe highly combinatorial systems of mechanistic interactions among proteins. These systems may be then simulated efficiently. Yet, the modeling mechanisms that inv
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::46925108cc88c5ddb5117f0c8162e052
https://hal.inria.fr/hal-02397876
https://hal.inria.fr/hal-02397876
Autor:
Mahika Dubey, Pierre Boutillier, Walter Fontana, Angus G. Forbes, Cassia Artanegara, Jasmine Otto, David Abramov
Publikováno v:
IEEE VIS (Short Papers)
We introduce RuleVis, a web-based application for defining and editing "correct-by-construction" executable rules that model biochemical functionality, which can be used to simulate the behavior of protein-protein interaction networks and other compl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b8105cc6b0eb44b011bf126d45cd2dec
https://escholarship.org/uc/item/47g8n4zk
https://escholarship.org/uc/item/47g8n4zk
Autor:
Pierre Boutillier
Publikováno v:
Computational Methods in Systems Biology ISBN: 9783030313036
CMSB
CMSB
Like during software development, interactivity is of tremendous help during model development. The more and the earlier feedback come, the more efficiently the target is reached. This is true for human as well as during mechanical model construction
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::36b367b87ca7fd8d232ae88af4966c08
https://doi.org/10.1007/978-3-030-31304-3_16
https://doi.org/10.1007/978-3-030-31304-3_16
Autor:
Kim Quyên Lý, Nathalie Théret, Jérôme Feret, Pierre Boutillier, Ferdinanda Camporesi, Pierre Vignet, Jean Coquet
Publikováno v:
CMSB 2018: Computational Methods in Systems Biology
CMSB 2018-16th International Conference on Computational Methods in Systems Biology
CMSB 2018-16th International Conference on Computational Methods in Systems Biology, Sep 2018, Brno, Czech Republic. pp.285-291, ⟨10.1007/978-3-319-99429-1_17⟩
Computational Methods in Systems Biology ISBN: 9783319994284
CMSB
Computational Methods in Systems Biology
Computational Methods in Systems Biology, 2018, Brno, Czech Republic. ⟨10.1007/978-3-319-99429-1⟩
CMSB 2018-16th International Conference on Computational Methods in Systems Biology
CMSB 2018-16th International Conference on Computational Methods in Systems Biology, Sep 2018, Brno, Czech Republic. pp.285-291, ⟨10.1007/978-3-319-99429-1_17⟩
Computational Methods in Systems Biology ISBN: 9783319994284
CMSB
Computational Methods in Systems Biology
Computational Methods in Systems Biology, 2018, Brno, Czech Republic. ⟨10.1007/978-3-319-99429-1⟩
International audience; KaSa is a static analyzer for Kappa models. Its goal is two-fold. Firstly, KaSa assists the modeler by warning about potential issues in the model. Secondly, KaSa may provide useful properties to check that what is implemented
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::15b45387544ea9cf6e3e47a19b8da992
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01888951/file/cmsb2018.pdf
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01888951/file/cmsb2018.pdf
Autor:
Xing Li, Jérôme Feret, Hector F. Medina-Abarca, Pierre Boutillier, Jean Krivine, Walter Fontana, Mutaamba Maasha, Angus G. Forbes, Ioana Cristescu
Publikováno v:
Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2018, 34 (13), pp.i583-i592. ⟨10.1093/bioinformatics/bty272⟩
Bioinformatics, 2018, Bioinformatics, 34 (13), pp.i583-i592. ⟨10.1093/bioinformatics/bty272⟩
Oxford University Press
Bioinformatics, Oxford University Press (OUP), 2018, Bioinformatics, 34 (13), pp.i583-i592. ⟨10.1093/bioinformatics/bty272⟩
Bioinformatics, Oxford University Press (OUP), 2018, 34 (13), pp.i583-i592. ⟨10.1093/bioinformatics/bty272⟩
Bioinformatics, 2018, Bioinformatics, 34 (13), pp.i583-i592. ⟨10.1093/bioinformatics/bty272⟩
Oxford University Press
Bioinformatics, Oxford University Press (OUP), 2018, Bioinformatics, 34 (13), pp.i583-i592. ⟨10.1093/bioinformatics/bty272⟩
Motivation We present an overview of the Kappa platform, an integrated suite of analysis and visualization techniques for building and interactively exploring rule-based models. The main components of the platform are the Kappa Simulator, the Kappa S
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f364412a77758866d1dbb6dee68217b9
https://hal.archives-ouvertes.fr/hal-02399100
https://hal.archives-ouvertes.fr/hal-02399100