Zobrazeno 1 - 10
of 78
pro vyhledávání: '"Pierre, Peterlongo"'
Publikováno v:
iScience, Vol 27, Iss 12, Pp 111435- (2024)
Summary: Genomic data sequencing is crucial for understanding biological systems. As genomic databases like the European Nucleotide Archive expand exponentially, efficient data manipulation is essential. A key challenge is querying these databases to
Externí odkaz:
https://doaj.org/article/487188aa09fb47c4a1746c76ec14fb88
Autor:
Daniel J Richter, Romain Watteaux, Thomas Vannier, Jade Leconte, Paul Frémont, Gabriel Reygondeau, Nicolas Maillet, Nicolas Henry, Gaëtan Benoit, Ophélie Da Silva, Tom O Delmont, Antonio Fernàndez-Guerra, Samir Suweis, Romain Narci, Cédric Berney, Damien Eveillard, Frederick Gavory, Lionel Guidi, Karine Labadie, Eric Mahieu, Julie Poulain, Sarah Romac, Simon Roux, Céline Dimier, Stefanie Kandels, Marc Picheral, Sarah Searson, Tara Oceans Coordinators, Stéphane Pesant, Jean-Marc Aury, Jennifer R Brum, Claire Lemaitre, Eric Pelletier, Peer Bork, Shinichi Sunagawa, Fabien Lombard, Lee Karp-Boss, Chris Bowler, Matthew B Sullivan, Eric Karsenti, Mahendra Mariadassou, Ian Probert, Pierre Peterlongo, Patrick Wincker, Colomban de Vargas, Maurizio Ribera d'Alcalà, Daniele Iudicone, Olivier Jaillon
Publikováno v:
eLife, Vol 11 (2022)
Biogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of microscopic organisms, whose biogeographical patterns have long been debated.
Externí odkaz:
https://doaj.org/article/c26de348bfd249799434b92710003da3
Autor:
Romuald Laso‐Jadart, Kevin Sugier, Emmanuelle Petit, Karine Labadie, Pierre Peterlongo, Christophe Ambroise, Patrick Wincker, Jean‐Louis Jamet, Mohammed‐Amin Madoui
Publikováno v:
Ecology and Evolution, Vol 10, Iss 16, Pp 8894-8905 (2020)
Abstract Acclimation allowed by variation in gene or allele expression in natural populations is increasingly understood as a decisive mechanism, as much as adaptation, for species evolution. However, for small eukaryotic organisms, as species from z
Externí odkaz:
https://doaj.org/article/01ddead37cf949e0bfe561d3c74fc8c0
Publikováno v:
Algorithms for Molecular Biology, Vol 15, Iss 1, Pp 1-7 (2020)
Abstract Recent large-scale community sequencing efforts allow at an unprecedented level of detail the identification of genomic regions that show signatures of natural selection. Traditional methods for identifying such regions from individuals’ h
Externí odkaz:
https://doaj.org/article/0f0e5cf0df3c442d90170e0f5346acb9
Autor:
Mathilde Cheray, Amandine Etcheverry, Camille Jacques, Romain Pacaud, Gwenola Bougras-Cartron, Marc Aubry, Florent Denoual, Pierre Peterlongo, Arulraj Nadaradjane, Joséphine Briand, Farida Akcha, Dominique Heymann, François M. Vallette, Jean Mosser, Benjamin Ory, Pierre-François Cartron
Publikováno v:
Molecular Cancer, Vol 19, Iss 1, Pp 1-16 (2020)
Abstract Background Literature reports that mature microRNA (miRNA) can be methylated at adenosine, guanosine and cytosine. However, the molecular mechanisms involved in cytosine methylation of miRNAs have not yet been fully elucidated. Here we inves
Externí odkaz:
https://doaj.org/article/559fa47d8d234bfea3bb4d6081c35783
Autor:
Kévin Da Silva, Nicolas Pons, Magali Berland, Florian Plaza Oñate, Mathieu Almeida, Pierre Peterlongo
Publikováno v:
PeerJ, Vol 9, p e11884 (2021)
Current studies are shifting from the use of single linear references to representation of multiple genomes organised in pangenome graphs or variation graphs. Meanwhile, in metagenomic samples, resolving strain-level abundances is a major step in mic
Externí odkaz:
https://doaj.org/article/372d7ee034e448f196c6893f119d07f3
Autor:
Laetitia Guillot, Ludovic Delage, Alain Viari, Yves Vandenbrouck, Emmanuelle Com, Andrés Ritter, Régis Lavigne, Dominique Marie, Pierre Peterlongo, Philippe Potin, Charles Pineau
Publikováno v:
BMC Genomics, Vol 20, Iss 1, Pp 1-19 (2019)
Abstract Background Accurate structural annotation of genomes is still a challenge, despite the progress made over the past decade. The prediction of gene structure remains difficult, especially for eukaryotic species, and is often erroneous and inco
Externí odkaz:
https://doaj.org/article/3e4dfee422294506bfabfb23dbc380a8
Autor:
Jérémy Gauthier, Charlotte Mouden, Tomasz Suchan, Nadir Alvarez, Nils Arrigo, Chloé Riou, Claire Lemaitre, Pierre Peterlongo
Publikováno v:
PeerJ, Vol 8, p e9291 (2020)
Restriction site Associated DNA Sequencing (RAD-Seq) is a technique characterized by the sequencing of specific loci along the genome that is widely employed in the field of evolutionary biology since it allows to exploit variants (mainly Single Nucl
Externí odkaz:
https://doaj.org/article/5d1557dedd104c629918fd0a4524950c
Publikováno v:
PLoS ONE, Vol 15, Iss 12, p e0244637 (2020)
The availability of large metagenomic data offers great opportunities for the population genomic analysis of uncultured organisms, which represent a large part of the unexplored biosphere and play a key ecological role. However, the majority of these
Externí odkaz:
https://doaj.org/article/eabc646b41bf450899f9839d8ba20a2e
Autor:
Arnaud Meng, Camille Marchet, Erwan Corre, Pierre Peterlongo, Adriana Alberti, Corinne Da Silva, Patrick Wincker, Eric Pelletier, Ian Probert, Johan Decelle, Stéphane Le Crom, Fabrice Not, Lucie Bittner
Publikováno v:
Microbiome, Vol 6, Iss 1, Pp 1-15 (2018)
Abstract Background Study of meta-transcriptomic datasets involving non-model organisms represents bioinformatic challenges. The production of chimeric sequences and our inability to distinguish the taxonomic origins of the sequences produced are inh
Externí odkaz:
https://doaj.org/article/a367a9a8b6f544fa94dca9b47b8503cf