Cumulant expansion with localization: a new representation of the diffusion MRI signal

Autor: Afzali Deligani, M, Pieciak, T, Jones, DK, Schneider, JE, Ozarslan, E

Publikováno v: Frontiers in Neuroimaging

Diffusion MR is sensitive to the microstructural features of a sample. Fine-scale characteristics can be probed by employing strong diffusion gradients while the low b-value regime is determined by the cumulants of the distribution of particle displa

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::e6426bd3cdf1a30f70b43a88cdb81eed
https://orca.cardiff.ac.uk/id/eprint/151821/4/fnimg-01-958680.pdf

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge.

Autor: Girard G; CIBM Center for Biomedical Imaging, Switzerland; Radiology Department, Centre Hospitalier Universitaire Vaudois and University of Lausanne, Lausanne, Switzerland; Signal Processing Laboratory (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland. Electronic address: gabriel.girard@epfl.ch., Rafael-Patiño J; Radiology Department, Centre Hospitalier Universitaire Vaudois and University of Lausanne, Lausanne, Switzerland; Signal Processing Laboratory (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland. Electronic address: jonathan.patinolopez@epfl.ch., Truffet R; Univ Rennes, Inria, CNRS, Inserm, IRISA UMR 6074, Empenn ERL U-1228, Rennes, France., Aydogan DB; A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland; Department of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland; Department of Psychiatry, Helsinki University Hospital, Helsinki, Finland., Adluru N; Waisman Center, University of Wisconsin-Madison, Madison, WI, United States; Department of Radiology, University of Wisconsin-Madison, Madison, WI, United States., Nair VA; Department of Radiology, University of Wisconsin-Madison, Madison, WI, United States., Prabhakaran V; Department of Radiology, University of Wisconsin-Madison, Madison, WI, United States., Bendlin BB; Department of Medicine, University of Wisconsin-Madison, Madison, WI, United States., Alexander AL; Waisman Center, University of Wisconsin-Madison, Madison, WI, United States; Department of Medical Physics, University of Wisconsin-Madison, Madison, WI, United States; Department of Psychiatry, University of Wisconsin-Madison, Madison, WI, United States., Bosticardo S; Diffusion Imaging and Connectivity Estimation (DICE) Lab, Department of Computer Science, University of Verona, Verona, Italy; Translational Imaging in Neurology (ThINk), Department of Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland., Gabusi I; Diffusion Imaging and Connectivity Estimation (DICE) Lab, Department of Computer Science, University of Verona, Verona, Italy; Department of Advanced Biomedical Sciences, University of Naples Federico II, Naples, Italy., Ocampo-Pineda M; Diffusion Imaging and Connectivity Estimation (DICE) Lab, Department of Computer Science, University of Verona, Verona, Italy., Battocchio M; Diffusion Imaging and Connectivity Estimation (DICE) Lab, Department of Computer Science, University of Verona, Verona, Italy; Sherbrooke Connectivity Imaging Laboratory (SCIL), Department of Computer Science, University of Sherbrooke, Sherbrooke, QC, Canada., Piskorova Z; Diffusion Imaging and Connectivity Estimation (DICE) Lab, Department of Computer Science, University of Verona, Verona, Italy; Brno Faculty of Electrical Engineering and Communication, Department of mathematics, University of Technology, Brno, Czech Republic., Bontempi P; Diffusion Imaging and Connectivity Estimation (DICE) Lab, Department of Computer Science, University of Verona, Verona, Italy., Schiavi S; Department of Neuroscience, Rehabilitation, Ophthalmology, Genetics, Maternal and Child Health (DINOGMI), University of Genoa, Genoa, Italy., Daducci A; Diffusion Imaging and Connectivity Estimation (DICE) Lab, Department of Computer Science, University of Verona, Verona, Italy., Stafiej A; AGH University of Science and Technology, Kraków, Poland., Ciupek D; Sano Centre for Computational Personalised Medicine, Kraków, Poland., Bogusz F; AGH University of Science and Technology, Kraków, Poland., Pieciak T; AGH University of Science and Technology, Kraków, Poland; Laboratorio de Procesado de Imagen (LPI), ETSI Telecomunicación, Universidad de Valladolid, Valladolid, Spain., Frigo M; Athena Project Team, Centre Inria d'Université Côte d'Azur, France., Sedlar S; Athena Project Team, Centre Inria d'Université Côte d'Azur, France., Deslauriers-Gauthier S; Athena Project Team, Centre Inria d'Université Côte d'Azur, France., Kojčić I; Athena Project Team, Centre Inria d'Université Côte d'Azur, France., Zucchelli M; Athena Project Team, Centre Inria d'Université Côte d'Azur, France., Laghrissi H; Athena Project Team, Centre Inria d'Université Côte d'Azur, France; Institut de Biologie de Valrose, Université Côte d'Azur, Nice, France., Ji Y; Athena Project Team, Centre Inria d'Université Côte d'Azur, France., Deriche R; Athena Project Team, Centre Inria d'Université Côte d'Azur, France., Schilling KG; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, United States., Landman BA; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, United States; Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, United States., Cacciola A; Brain Mapping Lab, Department of Biomedical, Dental Sciences and Morphological and Functional Images, University of Messina, Messina, Italy; Center for Complex Network Intelligence (CCNI), Tsinghua Laboratory of Brain and Intelligence (THBI), Tsinghua University, Beijing, China; Department of Biomedical Engineering, Tsinghua University, Beijing, China., Basile GA; Brain Mapping Lab, Department of Biomedical, Dental Sciences and Morphological and Functional Images, University of Messina, Messina, Italy., Bertino S; Brain Mapping Lab, Department of Biomedical, Dental Sciences and Morphological and Functional Images, University of Messina, Messina, Italy., Newlin N; Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, United States., Kanakaraj P; Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, United States., Rheault F; Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, United States., Filipiak P; Center for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, NYU Langone Health, New York, NY, United States., Shepherd TM; Center for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, NYU Langone Health, New York, NY, United States., Lin YC; Center for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, NYU Langone Health, New York, NY, United States., Placantonakis DG; Department of Neurosurgery, Perlmutter Cancer Center, Neuroscience Institute, Kimmel Center for Stem Cell Biology, NYU Langone Health, New York, NY, United States., Boada FE; Department of Radiology, Stanford University, Stanford, CA, United States., Baete SH; Center for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, NYU Langone Health, New York, NY, United States., Hernández-Gutiérrez E; Sherbrooke Connectivity Imaging Laboratory (SCIL), Department of Computer Science, University of Sherbrooke, Sherbrooke, QC, Canada., Ramírez-Manzanares A; Computer Science Department, Centro de Investigación en Matemáticas A.C, Guanajuato, México., Coronado-Leija R; Center for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, NYU Langone Health, New York, NY, United States., Stack-Sánchez P; Computer Science Department, Centro de Investigación en Matemáticas A.C, Guanajuato, México., Concha L; Instituto de Neurobiología, Universidad Nacional Autónoma de México, Juriquilla, Querétaro, México., Descoteaux M; Sherbrooke Connectivity Imaging Laboratory (SCIL), Department of Computer Science, University of Sherbrooke, Sherbrooke, QC, Canada., Mansour L S; Department of Biomedical Engineering, The University of Melbourne, Parkville, Victoria, Australia; Melbourne Neuropsychiatry Centre, Department of Psychiatry, The University of Melbourne and Melbourne Health, Parkville, Victoria, Australia., Seguin C; Melbourne Neuropsychiatry Centre, Department of Psychiatry, The University of Melbourne and Melbourne Health, Parkville, Victoria, Australia; School of Biomedical Engineering, The University of Sydney, Sydney, Australia; Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, United States., Zalesky A; Department of Biomedical Engineering, The University of Melbourne, Parkville, Victoria, Australia; Melbourne Neuropsychiatry Centre, Department of Psychiatry, The University of Melbourne and Melbourne Health, Parkville, Victoria, Australia., Marshall K; Signal Processing Laboratory (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland; McGill University, Montréal, QC, Canada., Canales-Rodríguez EJ; Signal Processing Laboratory (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland., Wu Y; Department of Radiology and Biomedical Research Imaging Center (BRIC), The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States; School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, China., Ahmad S; Department of Radiology and Biomedical Research Imaging Center (BRIC), The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States., Yap PT; Department of Radiology and Biomedical Research Imaging Center (BRIC), The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States., Théberge A; Sherbrooke Connectivity Imaging Laboratory (SCIL), Department of Computer Science, University of Sherbrooke, Sherbrooke, QC, Canada., Gagnon F; Sherbrooke Connectivity Imaging Laboratory (SCIL), Department of Computer Science, University of Sherbrooke, Sherbrooke, QC, Canada., Massi F; Sherbrooke Connectivity Imaging Laboratory (SCIL), Department of Computer Science, University of Sherbrooke, Sherbrooke, QC, Canada., Fischi-Gomez E; CIBM Center for Biomedical Imaging, Switzerland; Radiology Department, Centre Hospitalier Universitaire Vaudois and University of Lausanne, Lausanne, Switzerland; Signal Processing Laboratory (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland., Gardier R; Signal Processing Laboratory (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland., Haro JLV; Signal Processing Laboratory (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland., Pizzolato M; Signal Processing Laboratory (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland; Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kgs. Lyngby, Denmark., Caruyer E; Univ Rennes, Inria, CNRS, Inserm, IRISA UMR 6074, Empenn ERL U-1228, Rennes, France., Thiran JP; CIBM Center for Biomedical Imaging, Switzerland; Radiology Department, Centre Hospitalier Universitaire Vaudois and University of Lausanne, Lausanne, Switzerland; Signal Processing Laboratory (LTS5), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.

Publikováno v: NeuroImage [Neuroimage] 2023 Aug 15; Vol. 277, pp. 120231. Date of Electronic Publication: 2023 Jun 16.

Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies.

Autor: Aja-Fernández S; Laboratorio de Procesado de Imagen (LPI), ETSI Telecomunicación, Universidad de Valladolid, Spain. Electronic address: sanaja@tel.uva.es., Martín-Martín C; Laboratorio de Procesado de Imagen (LPI), ETSI Telecomunicación, Universidad de Valladolid, Spain., Planchuelo-Gómez Á; Laboratorio de Procesado de Imagen (LPI), ETSI Telecomunicación, Universidad de Valladolid, Spain; Cardiff University Brain Research Imaging Centre (CUBRIC), School of Psychology, Cardiff University, Cardiff, UK., Faiyaz A; University of Rochester, USA., Uddin MN; University of Rochester, USA., Schifitto G; University of Rochester, USA., Tiwari A; Shiv Nadar Institution of Eminence, India., Shigwan SJ; Shiv Nadar Institution of Eminence, India., Kumar Singh R; Shiv Nadar Institution of Eminence, India., Zheng T; Zhejiang University, China., Cao Z; Zhejiang University, China., Wu D; Zhejiang University, China., Blumberg SB; University College London, UK., Sen S; University College London, UK., Goodwin-Allcock T; University College London, UK., Slator PJ; University College London, UK., Yigit Avci M; Athinoula A. Martinos Center for Biomedical Imaging, USA., Li Z; Athinoula A. Martinos Center for Biomedical Imaging, USA., Bilgic B; Athinoula A. Martinos Center for Biomedical Imaging, USA., Tian Q; Athinoula A. Martinos Center for Biomedical Imaging, USA., Wang X; University of Sydney, Australia., Tang Z; University of Sydney, Australia., Cabezas M; University of Sydney, Australia., Rauland A; RWTH Aachen University, Germany., Merhof D; University of Regensburg, Germany., Manzano Maria R; University of Sao Paulo, Brazil., Campos VP; University of Sao Paulo, Brazil., Santini T; Western University, Canada., da Costa Vieira MA; University of Sao Paulo, Brazil., HashemizadehKolowri S; University of Utah, USA., DiBella E; University of Utah, USA., Peng C; Zhejiang University of Technology, China., Shen Z; Zhejiang University of Technology, China., Chen Z; Zhejiang University of Technology, China., Ullah I; University of Iowa, USA., Mani M; University of Iowa, USA., Abdolmotalleby H; University of Iowa, USA., Eckstrom S; New York University, USA., Baete SH; New York University, USA., Filipiak P; New York University, USA., Dong T; Tianjin University, China., Fan Q; Tianjin University, China., de Luis-García R; Laboratorio de Procesado de Imagen (LPI), ETSI Telecomunicación, Universidad de Valladolid, Spain., Tristán-Vega A; Laboratorio de Procesado de Imagen (LPI), ETSI Telecomunicación, Universidad de Valladolid, Spain., Pieciak T; Laboratorio de Procesado de Imagen (LPI), ETSI Telecomunicación, Universidad de Valladolid, Spain.

Publikováno v: NeuroImage. Clinical [Neuroimage Clin] 2023; Vol. 39, pp. 103483. Date of Electronic Publication: 2023 Jul 28.

Diffusion-relaxation scattered MR signal representation in a multi-parametric sequence.

Autor: Bogusz F; AGH University of Science and Technology, Kraków, Poland. Electronic address: fbogusz@agh.edu.pl., Pieciak T; AGH University of Science and Technology, Kraków, Poland; LPI, ETSI Telecomunicación, Universidad de Valladolid, Valladolid, Spain., Afzali M; Leeds Institute of Cardiovascular and Metabolic Medicine (LICAMM), Leeds, United Kingdom; Cardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom., Pizzolato M; Department of applied mathematics and computer science, Technical University of Denmark, Kongens Lyngby, Denmark; Signal Processing Lab (LTS5), École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland. Electronic address: mapiz@dtu.dk.

Publikováno v: Magnetic resonance imaging [Magn Reson Imaging] 2022 Sep; Vol. 91, pp. 52-61. Date of Electronic Publication: 2022 May 11.

Moment-based representation of the diffusion inside the brain from reduced DMRI acquisitions: Generalized AMURA.

Autor: Aja-Fernández S; LPI, ETSI Telecomunicación, Universidad de Valladolid, Castilla y León, Spain. Electronic address: sanaja@tel.uva.es., Pieciak T; LPI, ETSI Telecomunicación, Universidad de Valladolid, Castilla y León, Spain; AGH University of Science and Technology, Kraków, Poland. Electronic address: pieciak@lpi.tel.uva.es., Martín-Martín C; LPI, ETSI Telecomunicación, Universidad de Valladolid, Castilla y León, Spain. Electronic address: carmenmartinvi@gmail.com., Planchuelo-Gómez Á; LPI, ETSI Telecomunicación, Universidad de Valladolid, Castilla y León, Spain. Electronic address: a.planchuelo.gomez@gmail.com., de Luis-García R; LPI, ETSI Telecomunicación, Universidad de Valladolid, Castilla y León, Spain. Electronic address: rluigar@gmail.com., Tristán-Vega A; LPI, ETSI Telecomunicación, Universidad de Valladolid, Castilla y León, Spain. Electronic address: atriveg@lpi.tel.uva.es.

Publikováno v: Medical image analysis [Med Image Anal] 2022 Apr; Vol. 77, pp. 102356. Date of Electronic Publication: 2022 Jan 10.