Complete sequencing of ape genomes.

Autor: Yoo D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Rhie A; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Hebbar P; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Antonacci F; Department of Biosciences, Biotechnology and Environment, University of Bari, Bari, 70124, Italy., Logsdon GA; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Department of Genetics, Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19103, USA., Solar SJ; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Antipov D; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Pickett BD; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Safonova Y; Computer Science and Engineering Department, Huck Institutes of Life Sciences, Pennsylvania State University, State College, PA 16801, USA., Montinaro F; Department of Biosciences, Biotechnology and Environment, University of Bari, Bari, 70124, Italy.; Institute of Genomics, University of Tartu, Tartu, Estonia., Luo Y; Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA., Malukiewicz J; Research Unit for Evolutionary Immunogenomics, Department of Biology, University of Hamburg, 20146 Hamburg, Germany., Storer JM; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA., Lin J; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Sequeira AN; Department of Biology, Penn State University, University Park, PA 16802, USA., Mangan RJ; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Genetics Training Program, Harvard Medical School, Boston, MA 02115, USA., Hickey G; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Anez GM; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Balachandran P; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Bankevich A; Computer Science and Engineering Department, Huck Institutes of Life Sciences, Pennsylvania State University, State College, PA 16801, USA., Beck CR; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.; Department of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, CT, USA., Biddanda A; Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA., Borchers M; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Bouffard GG; NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Brannan E; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Brooks SY; NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Carbone L; Department of Medicine, KCVI, Oregon Health Sciences University, Portland, OR, USA.; Division of Genetics, Oregon National Primate Research Center, Beaverton, OR, USA., Carrel L; PSU Medical School, Penn State University School of Medicine, Hershey, PA, USA., Chan AP; The Translational Genomics Research Institute, a part of the City of Hope National Medical Center, Phoenix, AZ, USA., Crawford J; NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Diekhans M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Engelbrecht E; Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, Louisville, KY, USA., Feschotte C; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA., Formenti G; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10021, USA., Garcia GH; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., de Gennaro L; Department of Biosciences, Biotechnology and Environment, University of Bari, Bari, 70124, Italy., Gilbert D; San Diego Biomedical Research Institute, San Diego, CA, USA., Green RE; University of California Santa Cruz, Santa Cruz, CA, USA., Guarracino A; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA., Gupta I; Department of Computer Science and Engineering, University of California San Diego, CA, USA., Haddad D; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA., Han J; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, China., Harris RS; Department of Biology, Penn State University, University Park, PA 16802, USA., Hartley GA; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA., Harvey WT; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Hiller M; LOEWE Centre for Translational Biodiversity Genomics, Senckenberg Research Institute, Goethe University, Frankfurt, Germany., Hoekzema K; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Houck ML; San Diego Zoo Wildlife Alliance, Escondido, CA, 92027-7000, USA., Jeong H; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA., Kamali K; Department of Biology, Penn State University, University Park, PA 16802, USA., Kellis M; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., Kille B; Department of Computer Science, Rice University, Houston, TX 77005, USA., Lee C; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Lee Y; Laboratory of bioinformatics and population genetics, Interdisciplinary program in bioinformatics, Seoul National University, Republic of Korea., Lees W; Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, Louisville, KY, USA.; Bioengineering Program, Faculty of Engineering, Bar-Ilan University, Ramat Gan, Israel., Lewis AP; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Li Q; Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA., Loftus M; Department of Genetics & Biochemistry, Clemson University, Clemson, SC, USA.; Center for Human Genetics, Clemson University, Greenwood, SC, USA., Loh YHE; Neuroscience Research Institute, University of California, Santa Barbara, CA, USA., Loucks H; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Ma J; Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University, PA, USA., Mao Y; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, China.; Center for Genomic Research, International Institutes of Medicine, Fourth Affiliated Hospital, Zhejiang University, Yiwu, Zhejiang, China.; Shanghai Jiao Tong University Chongqing Research Institute, Chongqing, China., Martinez JFI; Computer Science and Engineering Department, Huck Institutes of Life Sciences, Pennsylvania State University, State College, PA 16801, USA., Masterson P; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA., McCoy RC; Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA., McGrath B; Department of Biology, Penn State University, University Park, PA 16802, USA., McKinney S; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Meyer BS; Research Unit for Evolutionary Immunogenomics, Department of Biology, University of Hamburg, 20146 Hamburg, Germany., Miga KH; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Mohanty SK; Department of Biology, Penn State University, University Park, PA 16802, USA., Munson KM; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Pal K; Department of Biology, Penn State University, University Park, PA 16802, USA., Pennell M; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Pevzner PA; Department of Computer Science and Engineering, University of California San Diego, CA, USA., Porubsky D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Potapova T; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Ringeling FR; Faculty of Informatics and Data Science, University of Regensburg, 93053 Regensburg, Germany., Roha JL; Department of Integrative Biology, University of California, Berkeley, Berkeley, USA., Ryder OA; San Diego Zoo Wildlife Alliance, Escondido, CA, 92027-7000, USA., Sacco S; University of California Santa Cruz, Santa Cruz, CA, USA., Saha S; Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, Louisville, KY, USA., Sasaki T; San Diego Biomedical Research Institute, San Diego, CA, USA., Schatz MC; Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA., Schork NJ; The Translational Genomics Research Institute, a part of the City of Hope National Medical Center, Phoenix, AZ, USA., Shanks C; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Smeds L; Department of Biology, Penn State University, University Park, PA 16802, USA., Son DR; Department of Ecology, Evolution and Marine Biology, Neuroscience Research Institute, University of California, Santa Barbara, CA, USA., Steiner C; San Diego Zoo Wildlife Alliance, Escondido, CA, 92027-7000, USA., Sweeten AP; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Tassia MG; Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA., Thibaud-Nissen F; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA., Torres-González E; Department of Biology, Penn State University, University Park, PA 16802, USA., Trivedi M; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA., Wei W; School of Life Sciences, Westlake University, Hangzhou 310024, China.; National Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070, Wuhan, China., Wertz J; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Yang M; Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University, PA, USA., Zhang P; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA., Zhang S; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, China., Zhang Y; Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University, PA, USA., Zhang Z; Department of Computer Science and Engineering, University of California San Diego, CA, USA., Zhao SA; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Zhu Y; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Jarvis ED; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Gerton JL; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Rivas-González I; Department of Primate Behavior and Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany., Paten B; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Szpiech ZA; Department of Biology, Penn State University, University Park, PA 16802, USA., Huber CD; Department of Biology, Penn State University, University Park, PA 16802, USA., Lenz TL; Research Unit for Evolutionary Immunogenomics, Department of Biology, University of Hamburg, 20146 Hamburg, Germany., Konkel MK; Department of Genetics & Biochemistry, Clemson University, Clemson, SC, USA.; Center for Human Genetics, Clemson University, Greenwood, SC, USA., Yi SV; Department of Ecology, Evolution and Marine Biology, Department of Molecular, Cellular and Developmental Biology, Neuroscience Research Institute, University of California, Santa Barbara, CA, USA., Canzar S; Faculty of Informatics and Data Science, University of Regensburg, 93053 Regensburg, Germany., Watson CT; Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, Louisville, KY, USA., Sudmant PH; Department of Integrative Biology, University of California, Berkeley, Berkeley, USA.; Center for Computational Biology, University of California, Berkeley, Berkeley, USA., Molloy E; Department of Computer Science, University of Maryland, College Park, MD 20742, USA., Garrison E; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA., Lowe CB; Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA., Ventura M; Department of Biosciences, Biotechnology and Environment, University of Bari, Bari, 70124, Italy., O'Neill RJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.; Department of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, CT, USA.; Departments of Molecular and Cell Biology, UConn Storrs, CT, USA., Koren S; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Makova KD; Department of Biology, Penn State University, University Park, PA 16802, USA., Phillippy AM; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Eichler EE; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Oct 05. Date of Electronic Publication: 2024 Oct 05.

The Ruminant Telomere-to-Telomere (RT2T) Consortium.

Autor: Kalbfleisch TS; Department of Veterinary Science, University of Kentucky, Lexington, KY, USA., McKay SD; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Murdoch BM; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Adelson DL; School of Biological Sciences, the University of Adelaide, North Terrace, Adelaide, South Australia, Australia., Almansa-Villa D; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Becker G; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Beckett LM; Department of Animal Sciences, Purdue University, West Lafayette, IN, USA., Benítez-Galeano MJ; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Biase F; School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA., Casey T; Department of Animal Sciences, Purdue University, West Lafayette, IN, USA., Chuong E; BioFrontiers Institute, Department of Molecular Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA., Clark E; The Roslin Institute, University of Edinburgh, Edinburgh, UK., Clarke S; Invermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand., Cockett N; Department of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, UT, USA., Couldrey C; Livestock Improvement Corporation, Hamilton, New Zealand., Davis BW; Department of Veterinary Pathobiology, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA., Elsik CG; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Faraut T; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Gao Y; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Genet C; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Grady P; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Green J; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Green R; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Guan D; Department of Animal Science, University of California, Davis, Davis, CA, USA., Hagen D; Department of Animal and Food Sciences, Oklahoma State University, Stillwater, OK, USA., Hartley GA; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Heaton M; U.S. Meat Animal Research Center, USDA ARS, Clay Center, NE, USA., Hoyt SJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Huang W; Department of Animal Science, Michigan State University, East Lansing, MI, USA., Jarvis E; Vertebrate Genome Laboratory, the Rockefeller University, New York, NY, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Kalleberg J; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Khatib H; Department of Animal and Dairy Sciences, the University of Wisconsin-Madison, Madison, WI, USA., Koepfi KP; Smithsonian-Mason School of Conservation, George Mason University, Front Royal, VA, USA.; Center for Species Survival, Smithsonian's National Zoo and Conservation Biology Institute, Front Royal, VA, USA., Koltes J; Department of Animal Science, Iowa State University, Ames, IA, USA., Koren S; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Kuehn C; Friedrich-Loeffler-Institute (German Federal Research Institute for Animal Health), Greifswald-Insel Riems, Germany., Leeb T; Institute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland., Leonard A; Animal Genomics, ETH Zürich, Zurich, Switzerland., Liu GE; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Low WY; The Davies Research Centre, School of Animal and Veterinary Sciences, University of Adelaide, Roseworthy, South Australia, Australia., McConnell H; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., McRae K; Invermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand., Miga K; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.; Biomolecular Engineering Department, University of California, Santa Cruz, Santa Cruz, CA, USA., Mousel M; Animal Disease Research Unit, USDA ARS, Pullman, WA, USA.; School for Global Animal Health, Washington State University, Pullman, WA, USA., Neibergs H; Department of Animal Science, Washington State University, Pullman, WA, USA., Olagunju T; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Pennell M; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Petry B; Department of Animal Science, Iowa State University, Ames, IA, USA., Pewsner M; Institute of Fish and Wildlife Health, Vetsuisse Faculty, University of Bern, Bern, Switzerland., Phillippy AM; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Pickett BD; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Pineda P; The Davies Research Centre, School of Animal and Veterinary Sciences, University of Adelaide, Roseworthy, South Australia, Australia., Potapova T; Stowers Institute for Medical Research, Kansas City, MO, USA., Rachagani S; Veterinary Medicine and Surgery, NextGen Precision Health Institute, University of Missouri, Columbia, MO, USA., Rhie A; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Rijnkels M; Department of Veterinary Integrative Biosciences, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA., Robic A; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Rodriguez Osorio N; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Safonova Y; Computer Science and Engineering Department, Huck Institutes of the Life Sciences, Pennsylvania State University, State College, PA, USA., Schettini G; School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA., Schnabel RD; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Sirpu Natesh N; Department of Veterinary Medicine and Surgery, University of Missouri, Columbia, MO, USA., Stegemiller M; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Storer J; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Stothard P; Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada., Stull C; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Tosser-Klopp G; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Traglia GM; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Tuggle CK; Department of Animal Science, Iowa State University, Ames, IA, USA., Van Tassell CP; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Watson C; Department of Biochemistry and Molecular Genetics, University of Louisville, Louisville, KY, USA., Weikard R; Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany., Wimmers K; Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany., Xie S; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Yang L; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Smith TPL; U.S. Meat Animal Research Center, USDA ARS, Clay Center, NE, USA. tim.smith2@usda.gov., O'Neill RJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA. rachel.oneill@uconn.edu.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA. rachel.oneill@uconn.edu., Rosen BD; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA. ben.rosen@usda.gov.

Publikováno v: Nature genetics [Nat Genet] 2024 Aug; Vol. 56 (8), pp. 1566-1573. Date of Electronic Publication: 2024 Aug 05.

Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy.

Autor: Larivière D; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA., Abueg L; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Brajuka N; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Gallardo-Alba C; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs University Freiburg, Freiburg, Germany., Grüning B; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs University Freiburg, Freiburg, Germany., Ko BJ; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea., Ostrovsky A; Departments of Biology and Computer Science, Johns Hopkins University, Baltimore, MD, USA., Palmada-Flores M; Department of Medicine and Life Sciences (MELIS), Institut de Biologia Evolutiva, Universitat Pompeu Fabra-CSIC, Barcelona, Spain., Pickett BD; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Rabbani K; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Antunes A; CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.; Department of Biology, Faculty of Sciences, University of Porto, Porto, Portugal., Balacco JR; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Chaisson MJP; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Cheng H; Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, USA.; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA., Collins J; Wellcome Sanger Institute, Cambridge, UK., Couture M; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Denisova A; Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia., Fedrigo O; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Gallo GR; Department of Biosciences, University of Milan, Milan, Italy., Giani AM; BMRI, Weill Cornell Medical College, New York, NY, USA., Gooder GM; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Horan K; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Jain N; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Johnson C; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Kim H; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.; eGnome, Inc., Seoul, Republic of Korea.; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea., Lee C; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Marques-Bonet T; Department of Medicine and Life Sciences (MELIS), Institut de Biologia Evolutiva, Universitat Pompeu Fabra-CSIC, Barcelona, Spain.; Catalan Institution of Research and Advanced Studies (ICREA), Barcelona, Spain.; CNAG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain., O'Toole B; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Rhie A; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Secomandi S; Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus., Sozzoni M; University of Florence, Department of Biology, Florence, Italy., Tilley T; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Uliano-Silva M; Tree of Life, Wellcome Sanger Institute, Cambridge, UK., van den Beek M; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA., Williams RW; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA., Waterhouse RM; Department of Ecology & Evolution and Swiss Institute of Bioinformatics, University of Lausanne, Lausanne, Switzerland., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Jarvis ED; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA. ejarvis@rockefeller.edu., Schatz MC; Departments of Biology and Computer Science, Johns Hopkins University, Baltimore, MD, USA. mschatz@cs.jhu.edu., Nekrutenko A; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA. anton@nekrut.org., Formenti G; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA. gformenti@rockefeller.edu.

Publikováno v: Nature biotechnology [Nat Biotechnol] 2024 Mar; Vol. 42 (3), pp. 367-370.

Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy.

Autor: Larivière D; Dept. of Biochemistry and Molecular Biology, Pennsylvania State University, USA., Abueg L; Vertebrate Genome Laboratory, The Rockefeller University, USA., Brajuka N; Vertebrate Genome Laboratory, The Rockefeller University, USA., Gallardo-Alba C; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany., Grüning B; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany., Ko BJ; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea., Ostrovsky A; Departments of Biology and Computer Science, Johns Hopkins University, USA., Palmada-Flores M; Department of Medicine and Life Sciences (MELIS), Institut de Biologia Evolutiva, Universitat Pompeu Fabra-CSIC, Barcelona 08003, Spain., Pickett BD; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Rabbani K; Department of Quantitative and Computational Biology, University of Southern California., Balacco JR; Vertebrate Genome Laboratory, The Rockefeller University, USA., Chaisson M; Department of Quantitative and Computational Biology, University of Southern California., Cheng H; Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, USA.; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA., Collins J; Wellcome Sanger Institute, Cambridge CB10 1SA, United Kingdom., Denisova A; Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Russia., Fedrigo O; Vertebrate Genome Laboratory, The Rockefeller University, USA., Gallo GR; Department of Biosciences, University of Milan, Milan, Italy., Giani AM; BMRI, Weill Cornell Medical College, New York, 10021, USA., Gooder GM; Vertebrate Genome Laboratory, The Rockefeller University, USA., Jain N; Vertebrate Genome Laboratory, The Rockefeller University, USA., Johnson C; Vertebrate Genome Laboratory, The Rockefeller University, USA., Kim H; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.; eGnome, Inc, Seoul, Republic of Korea.; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea., Lee C; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.; Laboratory of Neurogenetics of Language, The Rockefeller University, New York City, NY, 10065, USA., Marques-Bonet T; Department of Medicine and Life Sciences (MELIS), Institut de Biologia Evolutiva, Universitat Pompeu Fabra-CSIC, Barcelona 08003, Spain.; Catalan Institution of Research and Advanced Studies (ICREA), Barcelona 08010, Spain.; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona 08028, Spain.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Cerdanyola del Vallès 08193, Spain., O'Toole B; Vertebrate Genome Laboratory, The Rockefeller University, USA., Rhie A; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Secomandi S; Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus., Sozzoni M; University of Florence, Department of Biology, Via Madonna del Piano 6, Sesto Fiorentino (FI)., Tilley T; Vertebrate Genome Laboratory, The Rockefeller University, USA., Uliano-Silva M; Tree of Life, Wellcome Sanger Institute, Cambridge CB10 1SA, United Kingdom., van den Beek M; Dept. of Biochemistry and Molecular Biology, Pennsylvania State University, USA., Waterhouse RM; Department of Ecology & Evolution and Swiss Institute of Bioinformatics, University of Lausanne, Lausanne, Switzerland., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Jarvis ED; Vertebrate Genome Laboratory, The Rockefeller University, USA., Schatz MC; Departments of Biology and Computer Science, Johns Hopkins University, USA., Nekrutenko A; Dept. of Biochemistry and Molecular Biology, Pennsylvania State University, USA., Formenti G; Vertebrate Genome Laboratory, The Rockefeller University, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2023 Jun 30. Date of Electronic Publication: 2023 Jun 30.

Web-Based Protein Interactions Calculator Identifies Likely Proteome Coevolution with Alzheimer's Disease-Associated Proteins.

Autor: Ward KM; Department of Biology, Brigham Young University, Provo, UT 84602, USA., Pickett BD; Department of Biology, Brigham Young University, Provo, UT 84602, USA., Ebbert MTW; Sanders-Brown Center on Aging, University of Kentucky, Lexington, KY 40536, USA.; Division of Biomedical Informatics, Department of Internal Medicine, University of Kentucky, Lexington, KY 40506, USA.; Department of Neuroscience, University of Kentucky, Lexington, KY 40506, USA., Kauwe JSK; Department of Biology, Brigham Young University, Provo, UT 84602, USA., Miller JB; Sanders-Brown Center on Aging, University of Kentucky, Lexington, KY 40536, USA.; Division of Biomedical Informatics, Department of Internal Medicine, University of Kentucky, Lexington, KY 40506, USA.; Department of Pathology and Laboratory Medicine, University of Kentucky, Lexington, KY 40506, USA.

Publikováno v: Genes [Genes (Basel)] 2022 Jul 27; Vol. 13 (8). Date of Electronic Publication: 2022 Jul 27.