Zobrazeno 1 - 10
of 880
pro vyhledávání: '"Phillippy A"'
Autor:
Ashley T. Sendell-Price, Frank J. Tulenko, Mats Pettersson, Du Kang, Margo Montandon, Sylke Winkler, Kathleen Kulb, Gavin P. Naylor, Adam Phillippy, Olivier Fedrigo, Jacquelyn Mountcastle, Jennifer R. Balacco, Amalia Dutra, Rebecca E. Dale, Bettina Haase, Erich D. Jarvis, Gene Myers, Shawn M. Burgess, Peter D. Currie, Leif Andersson, Manfred Schartl
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-13 (2023)
Abstract Sharks occupy diverse ecological niches and play critical roles in marine ecosystems, often acting as apex predators. They are considered a slow-evolving lineage and have been suggested to exhibit exceptionally low cancer rates. These two fe
Externí odkaz:
https://doaj.org/article/697d70ec965d44079d0c1fc4031212cc
Autor:
Schatz Michael C, Phillippy Adam M
Publikováno v:
GigaScience, Vol 1, Iss 1, p 4 (2012)
Abstract Driven by million-fold improvements in biotechnology, biology is increasingly shifting towards high-resolution, quantitative approaches to study the molecular dynamics of entire populations. One exciting application enabled by this new era o
Externí odkaz:
https://doaj.org/article/da29e98e2a5c47e5bdc7e0a29df1b7cb
Publikováno v:
BMC Bioinformatics, Vol 12, Iss 1, p 385 (2011)
Abstract Background A critical output of metagenomic studies is the estimation of abundances of taxonomical or functional groups. The inherent uncertainty in assignments to these groups makes it important to consider both their hierarchical contexts
Externí odkaz:
https://doaj.org/article/18072bef925f44d1908f72826120f6f2
Autor:
Hsiao William W, Phillippy Adam M, Harris Anthony D, Johnson J Kristie, Sahl Jason W, Thom Kerri A, Rasko David A
Publikováno v:
BMC Genomics, Vol 12, Iss 1, p 291 (2011)
Abstract Background Acinetobacter baumannii has recently emerged as a significant global pathogen, with a surprisingly rapid acquisition of antibiotic resistance and spread within hospitals and health care institutions. This study examines the genomi
Externí odkaz:
https://doaj.org/article/20bdd6225bd5482ea5e65752533d511e
Publikováno v:
BMC Genomics, Vol 11, Iss 1, p 500 (2010)
Abstract Background Bacterial pathogens often show significant intraspecific variations in ecological fitness, host preference and pathogenic potential to cause infectious disease. The species of Listeria monocytogenes, a facultative intracellular pa
Externí odkaz:
https://doaj.org/article/f4157021d1d84014b683b575837f4526
Autor:
Geoffrey C. Waldbieser, Shikai Liu, Zihao Yuan, Caitlin E. Older, Dongya Gao, Chenyu Shi, Brian G. Bosworth, Ning Li, Lisui Bao, Mona A. Kirby, Yulin Jin, Monica L. Wood, Brian Scheffler, Sheron Simpson, Ramey C. Youngblood, Mary V. Duke, Linda Ballard, Adam Phillippy, Sergey Koren, Zhanjiang Liu
Publikováno v:
BMC Biology, Vol 21, Iss 1, Pp 1-23 (2023)
Abstract Background Channel catfish and blue catfish are the most important aquacultured species in the USA. The species do not readily intermate naturally but F1 hybrids can be produced through artificial spawning. F1 hybrids produced by mating chan
Externí odkaz:
https://doaj.org/article/9ce06cf9470743a8b95e2efe11b26f1a
Publikováno v:
BMC Bioinformatics, Vol 10, Iss 1, p 293 (2009)
Abstract Background Array comparative genomic hybridization is a fast and cost-effective method for detecting, genotyping, and comparing the genomic sequence of unknown bacterial isolates. This method, as with all microarray applications, requires ad
Externí odkaz:
https://doaj.org/article/04b6ad948d4b458081ef31a67cd1dcd7
Autor:
Verdier Valerie, Szurek Boris, Meyer Damien F, Ishihara Hiromichi, Patil Prabhu B, Pandey Alok, Jha Gopaljee, Aparna Gudlur, Trapnell Cole, Shumway Martin, Radune Diana, Puiu Daniela, Madupu Ramana, Kelley David, Delcher Arthur L, Ochiai Hirokazu, Furutani Ayako, Tsuge Seiji, Rabinowicz Pablo D, Phillippy Adam M, Schatz Michael C, Sommer Daniel D, Salzberg Steven L, Koebnik Ralf, Dow J Maxwell, Ryan Robert P, Hirata Hisae, Tsuyumu Shinji, Lee Sang, Seo Young-Su, Sriariyanum Malinee, Ronald Pamela C, Sonti Ramesh V, Van Sluys Marie-Anne, Leach Jan E, White Frank F, Bogdanove Adam J
Publikováno v:
BMC Genomics, Vol 9, Iss 1, p 534 (2008)
Externí odkaz:
https://doaj.org/article/4532978a90da45febfc9b3ee02e6158f
Autor:
Szurek Boris, Meyer Damien F, Ishihara Hiromichi, Patil Prabhu B, Pandey Alok, Jha Gopaljee, Aparna Gudlur, Trapnell Cole, Shumway Martin, Radune Diana, Puiu Daniela, Madupu Ramana, Kelley David, Delcher Arthur L, Ochiai Hirokazu, Furutani Ayako, Tsuge Seiji, Rabinowicz Pablo D, Phillippy Adam M, Schatz Michael C, Sommer Daniel D, Salzberg Steven L, Verdier Valerie, Koebnik Ralf, Dow J Maxwell, Ryan Robert P, Hirata Hisae, Tsuyumu Shinji, Won Lee Sang, Ronald Pamela C, Sonti Ramesh V, Van Sluys Marie-Anne, Leach Jan E, White Frank F, Bogdanove Adam J
Publikováno v:
BMC Genomics, Vol 9, Iss 1, p 204 (2008)
Abstract Background Xanthomonas oryzae pv. oryzae causes bacterial blight of rice (Oryza sativa L.), a major disease that constrains production of this staple crop in many parts of the world. We report here on the complete genome sequence of strain P
Externí odkaz:
https://doaj.org/article/b9d31e680de54b928d31accc061b08e2
Autor:
Liao, Wen-Wei, Asri, Mobin, Ebler, Jana, Doerr, Daniel, Haukness, Marina, Hickey, Glenn, Lu, Shuangjia, Lucas, Julian K., Monlong, Jean, Abel, Haley J., Buonaiuto, Silvia, Chang, Xian H., Cheng, Haoyu, Chu, Justin, Colonna, Vincenza, Eizenga, Jordan M., Feng, Xiaowen, Fischer, Christian, Fulton, Robert S., Garg, Shilpa, Groza, Cristian, Guarracino, Andrea, Harvey, William T., Heumos, Simon, Howe, Kerstin, Jain, Miten, Lu, Tsung-Yu, Markello, Charles, Martin, Fergal J., Mitchell, Matthew W., Munson, Katherine M., Mwaniki, Moses Njagi, Novak, Adam M., Olsen, Hugh E., Pesout, Trevor, Porubsky, David, Prins, Pjotr, Sibbesen, Jonas A., Tomlinson, Chad, Villani, Flavia, Vollger, Mitchell R., Antonacci-Fulton, Lucinda L., Baid, Gunjan, Baker, Carl A., Belyaeva, Anastasiya, Billis, Konstantinos, Carroll, Andrew, Chang, Pi-Chuan, Cody, Sarah, Cook, Daniel E., Cornejo, Omar E., Diekhans, Mark, Ebert, Peter, Fairley, Susan, Fedrigo, Olivier, Felsenfeld, Adam L., Formenti, Giulio, Frankish, Adam, Gao, Yan, Giron, Carlos Garcia, Green, Richard E., Haggerty, Leanne, Hoekzema, Kendra, Hourlier, Thibaut, Ji, Hanlee P., Kolesnikov, Alexey, Korbel, Jan O., Kordosky, Jennifer, Lee, HoJoon, Lewis, Alexandra P., Magalhães, Hugo, Marco-Sola, Santiago, Marijon, Pierre, McDaniel, Jennifer, Mountcastle, Jacquelyn, Nattestad, Maria, Olson, Nathan D., Puiu, Daniela, Regier, Allison A., Rhie, Arang, Sacco, Samuel, Sanders, Ashley D., Schneider, Valerie A., Schultz, Baergen I., Shafin, Kishwar, Sirén, Jouni, Smith, Michael W., Sofia, Heidi J., Abou Tayoun, Ahmad N., Thibaud-Nissen, Françoise, Tricomi, Francesca Floriana, Wagner, Justin, Wood, Jonathan M.D., Zimin, Aleksey V., Popejoy, Alice B., Bourque, Guillaume, Chaisson, Mark J.P., Flicek, Paul, Phillippy, Adam M., Zook, Justin M., Eichler, Evan E., Haussler, David, Jarvis, Erich D., Miga, Karen H., Wang, Ting, Garrison, Erik, Marschall, Tobias, Hall, Ira, Li, Heng, Paten, Benedict, Greer, Stephanie U., Pavlichin, Dmitri S., Zhou, Bo, Urban, Alexander E., Weissman, Tsachy
Publikováno v:
In Cell Reports Methods 28 August 2023 3(8)