Zobrazeno 1 - 10
of 255
pro vyhledávání: '"Philip n, Benfey"'
Publikováno v:
STAR Protocols, Vol 3, Iss 4, Pp 101729- (2022)
Summary: We describe a protocol to perform fast and non-arbitrary quality control of single-cell RNA sequencing (scRNA-seq) raw data using scKB and COPILOT. scKB is a wrapper script of kallisto and bustools for accelerated alignment and transcript co
Externí odkaz:
https://doaj.org/article/187756b9163d43b4b5e9d823c79bffe6
Autor:
Elhanan Tzipilevich, Philip N. Benfey
Publikováno v:
mBio, Vol 12, Iss 4 (2021)
ABSTRACT Bacteriophage predation is an important factor in bacterial community dynamics and evolution. Phage-bacterium interaction has mainly been studied in lab cultures, while dynamics in natural habitats, and especially in the plant root niche, ar
Externí odkaz:
https://doaj.org/article/a78d5eb2dd694dfc870a291354ab3227
Autor:
Mingyuan Zhu, Philip N. Benfey
Publikováno v:
Current Biology. 33:R114-R117
Autor:
Alexandre Grondin, Shalabh Dixit, Rolando Torres, Challa Venkateshwarlu, Eric Rogers, Thomas Mitchell-Olds, Philip N. Benfey, Arvind Kumar, Amelia Henry
Publikováno v:
Rice, Vol 11, Iss 1, Pp 1-17 (2018)
Abstract Background Traditional rice (Oryza sativa) varieties are valuable resources for the improvement of drought resistance. qDTY 3.2 is a drought-yield quantitative trait locus that was identified in a population derived from the traditional vari
Externí odkaz:
https://doaj.org/article/27088eebd23d4a3b95c20dfed3a916b2
Autor:
Chen Li, Yusuke Sako, Akihiro Imai, Tomoaki Nishiyama, Kari Thompson, Minoru Kubo, Yuji Hiwatashi, Yukiko Kabeya, Dale Karlson, Shu-Hsing Wu, Masaki Ishikawa, Takashi Murata, Philip N. Benfey, Yoshikatsu Sato, Yosuke Tamada, Mitsuyasu Hasebe
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-13 (2017)
Land plants and metazoans are both able to reprogram differentiated cells to stem cells under certain circumstances. Here the authors show that the moss CSP1 protein, which shares conserved domains with the mammalian pluripotent stem cell factor Lin2
Externí odkaz:
https://doaj.org/article/a6e9d7ab70f7406bb98e3f609436a6b1
Autor:
Masaki Ishikawa, Ayaka Fujiwara, Ken Kosetsu, Yuta Horiuchi, Naoya Kamamoto, Naoyuki Umakawa, Yosuke Tamada, Liechi Zhang, Katsuyoshi Matsushita, Gergo Palfalvi, Tomoaki Nishiyama, Sota Kitasaki, Yuri Masuda, Yoshiki Shiroza, Munenori Kitagawa, Toru Nakamura, Hongchang Cui, Yuji Hiwatashi, Yukiko Kabeya, Shuji Shigenobu, Tsuyoshi Aoyama, Kagayaki Kato, Takashi Murata, Koichi Fujimoto, Philip N. Benfey, Mitsuyasu Hasebe, Rumiko Kofuji
Publikováno v:
Proceedings of the National Academy of Sciences. 120
Plant cells are surrounded by a cell wall and do not migrate, which makes the regulation of cell division orientation crucial for development. Regulatory mechanisms controlling cell division orientation may have contributed to the evolution of body o
Autor:
Trevor M. Nolan, Nemanja Vukašinović, Che-Wei Hsu, Jingyuan Zhang, Isabelle Vanhoutte, Rachel Shahan, Isaiah W. Taylor, Laura Greenstreet, Matthieu Heitz, Anton Afanassiev, Ping Wang, Pablo Szekely, Aiden Brosnan, Yanhai Yin, Geoffrey Schiebinger, Uwe Ohler, Eugenia Russinova, Philip N. Benfey
Publikováno v:
SCIENCE
Science
Science
Brassinosteroids are plant steroid hormones that regulate diverse processes, such as cell division and cell elongation, through gene regulatory networks that vary in space and time. By using time series single-cell RNA sequencing to profile brassinos
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0b15789f287c4c12dcac9661bfd39ff1
https://biblio.ugent.be/publication/01GX3832S6RHTHB2KPR99Z4JYS
https://biblio.ugent.be/publication/01GX3832S6RHTHB2KPR99Z4JYS
Autor:
Cara M. Winter, Pablo Szekely, Heather Belcher, Raina Carter, Matthew Jones, Scott E. Fraser, Thai V. Truong, Philip N. Benfey
Precise control of cell division is essential for proper patterning and growth during the development of multicellular organisms. Coordination of formative (asymmetric) divisions that generate new tissue patterns with proliferative (symmetric) divisi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::2ee639a3e472c674fc23d5abfd071dba
https://doi.org/10.1101/2022.09.22.508753
https://doi.org/10.1101/2022.09.22.508753
Autor:
Trevor M Nolan, Nemanja Vukašinović, Che-Wei Hsu, Jingyuan Zhang, Isabelle Vanhoutte, Rachel Shahan, Isaiah W Taylor, Laura Greenstreet, Matthieu Heitz, Anton Afanassiev, Ping Wang, Pablo Szekely, Aiden Brosnan, Yanhai Yin, Geoffrey Schiebinger, Uwe Ohler, Eugenia Russinova, Philip N Benfey
Brassinosteroids (BRs) are plant steroid hormones that regulate diverse processes such as cell division and cell elongation. BRs control thousands of genes through gene regulatory networks that vary in space and time. By using time-series single-cell
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::af3da20da4212083fc952af702e07251
https://doi.org/10.1101/2022.09.16.508001
https://doi.org/10.1101/2022.09.16.508001
Autor:
Fletcher O’Neil, Jeffrey Aguilar, Sam Farrow, Matt Moore, Logan Johnson, Jesse B. Windle, Philip N. Benfey, Drew Walker, Jake L. Edwards, Jake Thystrup, Eric Rogers, Rachel F. Greenhut
Publikováno v:
Plant Physiology
Optimizing root system architecture offers a promising approach to developing stress tolerant cultivars in the face of climate change, as root systems are critical for water and nutrient uptake as well as mechanical stability. However, breeding for o