Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis

Autor: Jack P. Wang, Megan L. Matthews, Cranos M. Williams, Rui Shi, Chenmin Yang, Sermsawat Tunlaya-Anukit, Hsi-Chuan Chen, Quanzi Li, Jie Liu, Chien-Yuan Lin, Punith Naik, Ying-Hsuan Sun, Philip L. Loziuk, Ting-Feng Yeh, Hoon Kim, Erica Gjersing, Todd Shollenberger, Christopher M. Shuford, Jina Song, Zachary Miller, Yung-Yun Huang, Charles W. Edmunds, Baoguang Liu, Yi Sun, Ying-Chung Jimmy Lin, Wei Li, Hao Chen, Ilona Peszlen, Joel J. Ducoste, John Ralph, Hou-Min Chang, David C. Muddiman, Mark F. Davis, Chris Smith, Fikret Isik, Ronald Sederoff, Vincent L. Chiang

Publikováno v: Nature Communications, Vol 9, Iss 1, Pp 1-16 (2018)

A systematic analysis of lignin biosynthetic genes to quantitatively understand their effect on wood properties is still lacking. Here, the authors integrate transcriptomic, proteomic, fluxomic and phenomic data to quantify the impact of perturbation

Externí odkaz: https://doaj.org/article/817eb35cb43b4ebba1c0b15bf1b3b12e

Mechanisms of Egg Yolk Formation and Implications on Early Life History of White Perch (Morone americana).

Autor: Justin Schilling, Philip L Loziuk, David C Muddiman, Harry V Daniels, Benjamin J Reading

Publikováno v: PLoS ONE, Vol 10, Iss 11, p e0143225 (2015)

The three white perch (Morone americana) vitellogenins (VtgAa, VtgAb, VtgC) were quantified accurately and precisely in the liver, plasma, and ovary during pre-, early-, mid-, and post-vitellogenic oocyte growth using protein cleavage-isotope dilutio

Externí odkaz: https://doaj.org/article/f44e990e461d4efaab56d2489f5a7c1e

Examining ubiquitinated peptide enrichment efficiency through an epitope labeled protein

Autor: Philip L. Loziuk, Joshua G. Pierce, Yasamin Moazami, Yeonyee Oh, Jennifer Parker, Ralph A. Dean, David C. Muddiman

Publikováno v: Analytical Biochemistry. 512:114-119

Ubiquitination is a dynamic process that is responsible for regulation of cellular responses to stimuli in a number of biological systems. Previous efforts to study this post-translational modification have focused on protein enrichment; however, rec

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b3192a06da2bd508bb674035d837f0c5
https://doi.org/10.1016/j.ab.2016.08.017

Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis

Autor: Jie Liu, Yung-Yun Huang, Ilona Peszlen, Chien-Yuan Lin, John Ralph, Ronald R. Sederoff, Ting-Feng Yeh, Hsi Chuan Chen, Punith P. Naik, Todd Shollenberger, Jina Song, Vincent L. Chiang, Rui Shi, Chris Smith, Baoguang Liu, Wei Li, Ying-Hsuan Sun, Megan L. Matthews, Cranos M. Williams, Philip L. Loziuk, Quanzi Li, Fikret Isik, Jack P. Wang, Joel J. Ducoste, Hoon Kim, Christopher M. Shuford, Erica Gjersing, Hou-min Chang, Sermsawat Tunlaya-Anukit, Ying Chung Jimmy Lin, David C. Muddiman, Hao Chen, Zachary D. Miller, Chenmin Yang, Charles W. Edmunds, Mark F. Davis, Yi Sun

Publikováno v: Nature communications, vol 9, iss 1
Nature Communications, Vol 9, Iss 1, Pp 1-16 (2018)
Nature Communications
Wang, JP; Matthews, ML; Williams, CM; Shi, R; Yang, C; Tunlaya-Anukit, S; et al.(2018). Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis. Nature Communications, 9(1). doi: 10.1038/s41467-018-03863-z. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/8nj553nt

A multi-omics quantitative integrative analysis of lignin biosynthesis can advance the strategic engineering of wood for timber, pulp, and biofuels. Lignin is polymerized from three monomers (monolignols) produced by a grid-like pathway. The pathway

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::72c37a15ff5651d1684a472f0761df94
https://escholarship.org/uc/item/8nj553nt

Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O -methyltransferase activity in poplar monolignol biosynthesis

Autor: Rui Shi, Philip L. Loziuk, Vincent L. Chiang, Hao Chen, Guan-Zheng Qu, Ronald R. Sederoff, David C. Muddiman, Ling Chuang, Ying-Chung Lin, Jack P. Wang

Publikováno v: Proceedings of the National Academy of Sciences. 112:8481-8486

Although phosphorylation has long been known to be an important regulatory modification of proteins, no unequivocal evidence has been presented to show functional control by phosphorylation for the plant monolignol biosynthetic pathway. Here, we pres

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cc1a1135ddca687bc14b8eae1598858c
https://doi.org/10.1073/pnas.1510473112