Rapid profiling of Plasmodium parasites from genome sequences to assist malaria control.

Autor: Phelan, Jody E.¹ (AUTHOR) jody.phelan@lshtm.ac.uk, Turkiewicz, Anna¹ (AUTHOR), Manko, Emilia¹ (AUTHOR), Thorpe, Joseph¹ (AUTHOR), Vanheer, Leen N.¹ (AUTHOR), van de Vegte-Bolmer, Marga² (AUTHOR), Ngoc, Nguyen Thi Hong³ (AUTHOR), Binh, Nguyen Thi Huong³ (AUTHOR), Thieu, Nguyen Quang³ (AUTHOR), Gitaka, Jesse⁴ (AUTHOR), Nolder, Debbie^1,5 (AUTHOR), Beshir, Khalid B.¹ (AUTHOR), Dombrowski, Jamille G.⁶ (AUTHOR), Di Santi, Silvia Maria⁷ (AUTHOR), Bousema, Teun² (AUTHOR), Sutherland, Colin J.^1,5 (AUTHOR), Campino, Susana¹ (AUTHOR) susana.campino@lshtm.ac.uk, Clark, Taane G.^1,8 (AUTHOR) taane.clark@lshtm.ac.uk

Publikováno v: Genome Medicine. 11/10/2023, Vol. 15 Issue 1, p1-11. 11p.

Leveraging large-scale Mycobacterium tuberculosis whole genome sequence data to characterise drug-resistant mutations using machine learning and statistical approaches.

Autor: Pruthi, Siddharth Sanjay, Billows, Nina, Thorpe, Joseph, Campino, Susana, Phelan, Jody E., Mohareb, Fady, Clark, Taane G.

Publikováno v: Scientific Reports; 11/7/2024, Vol. 14 Issue 1, p1-10, 10p

Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data.

Autor: Spadar, Anton¹ (AUTHOR), Phelan, Jody E.¹ (AUTHOR), Clark, Taane G.^1,2,3 (AUTHOR) taane.clark@lshtm.ac.uk, Campino, Susana^1,3 (AUTHOR) susana.campino@lshtm.ac.uk

Publikováno v: Parasites & Vectors. 8/5/2023, Vol. 16 Issue 1, p1-6. 6p.

High throughput human genotyping for variants associated with malarial disease outcomes using custom targeted amplicon sequencing.

Autor: Osborne, Ashley^1,2 (AUTHOR), Phelan, Jody E.¹ (AUTHOR), Vanheer, Leen N.¹ (AUTHOR), Manjurano, Alphaxard^3,4 (AUTHOR), Gitaka, Jesse^5,6 (AUTHOR), Drakeley, Christopher J.¹ (AUTHOR), Kaneko, Akira^7,8 (AUTHOR), Kita, Kiyoshi² (AUTHOR), Campino, Susana^1,9 (AUTHOR) susana.campino@lshtm.ac.uk, Clark, Taane G.^1,9,10 (AUTHOR) taane.clark@lshtm.ac.uk

Publikováno v: Scientific Reports. 7/26/2023, Vol. 13 Issue 1, p1-10. 10p.

Whole genome sequencing analysis of Mycobacterium tuberculosis reveals circulating strain types and drug-resistance mutations in the Philippines.

Autor: Wang, Linfeng, Lim, Dodge R., Phelan, Jody E., Reyes, Lorenzo T., Palparan, Alma G., Sanchez, Maria Guileane C., Asuncion, Louella Abigail A., Tujan, Ma. Angelica A., Medado, Inez Andrea P., Daga, Chona Mae A., Llames, Jo-Hannah S., Mitarai, Satoshi, Murase, Yoshiro, Morishige, Yuta, Ang, Concepcion F., Malabad, John Carlo M., Montoya, Jaime C., Hafalla, Julius C., Campino, Susana, Hibberd, Martin L.

Publikováno v: Scientific Reports; 8/23/2024, Vol. 14 Issue 1, p1-11, 11p