Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains

Autor: Phan, MVT, Tue, NT, Pham, HA, Baker, S, Kellam, P, Cotten, M, Bach, TK, Berto, A, Boni, MF, Bryant, JE, Bui, DP, Campbell, JI, Carrique-Mas, J, Dang, MH, Dang, TH, Dang, TO, Day, JN, Dinh, VT, Van Doorn, HR, Duong, AH, Farrar, JJ, Hau, TTT, Ho, DTN, Hoang, BL, Hoang, VD, Huynh, TKT, Lam, CC, Le, MH, Le, TP, Le, XL, Luu, TTH, Ly, VC, Mai, TPL, Nadjm, B, Ngo, TB, Ngo, TH, Nguyen, CT, Nguyen, DT, Nguyen, D, Nguyen, KC, Nguyen, NA, Nguyen, NV, Nguyen, QH, Nguyen, TD, Nguyen, TM, Nguyen, TB, Nguyen, THT, Nguyen, TKC, Nguyen, TLN, Nguyen, TLH, Nguyen, TNL, Nguyen, TND, Nguyen, TN, Nguyen, TSC, Nguyen, TYC, Nguyen, TT, Nguyen, TV, Nguyen, VC, Nguyen, VH, Nguyen, VK, Nguyen, VMH, Nguyen, V, Nguyen, VT, Nguyen, VVC, Nguyen, VX, Pham, HM, Pham, TMK, Pham, TTT, Pham, VL, Pham, VM, Phan, VBB, Rabaa, MA, Rahman, M, Thompson, C, Thwaites, G, Ta, TDN, Tran, DHN, Tran, HMC, Tran, KT, Tran, MP, Tran, TKH, Tran, TND, Tran, TTT, Tran, TTM, Tran, TN, Tran, TH, Trinh, QT, Vo, BH, Vo, NT, Vo, QC, Voong, VP, Vu, TLH, Vu, TTH, Wertheim, H, Bogaardt, C, Chase-Topping, M, Ivens, A, Lu, L, Dung, N, Rambaut, A, Simmonds, P, Woolhouse, M, Munnink, BO, Deijs, M, Van der Hoek, L, Jebbink, MF, Farsani, SMJ, Dodd, K, Euren, J, Lucas, A, Ortiz, N, Pennacchio, L, Rubin, E, Saylors, KE, Tran, MH, Wolfe, ND

Publikováno v: Virus Evolution
Virus Evolution, 4(2):vey035. Oxford University Press

The Coronaviridae family of viruses encompasses a group of pathogens with a zoonotic potential as observed from previous outbreaks of the severe acute respiratory syndrome coronavirus and Middle East respiratory syndrome coronavirus. Accordingly, it

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::612b909b1b1d0f9d61fca465b7c9e77e

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic

Autor: Dudas, G, Carvalho, LM, Bedford, T, Tatem, A, Baele, G, Faria, N, Park, D, Ladner, J, Arias, A, Asogun, D, Bielejec, F, Caddy, S, Cotten, M, Dambrozio, J, Dellicour, S, Di Caro, A, Diclaro, J, Duraffour, S, Elmore, M, Fakoli, L, Gilbert, M, Gevao, S, Gire, S, Gladden-Young, A, Gnirke, A, Goba, A, Grant, D, Haagmans, B, Hiscox, J, Jah, U, Kargbo, B, Kugelman, J, Liu, D, Lu, J, Malboeuf, C, Mate, S, Matthews, D, Matranga, C, Meredith, L, Qu, J, Quick, J, Pas, S, Phan, MVT, Poliakis, G, Reusken, C, Sanchez-Lockhart, M, Schaffner, S, Schieffelin, J, Sealfon, R, Simon-Loriere, E, Smits, S, Stoecker, K, Thorne, L, Tobin, E, Vandi, M, Watson, S, West, K, Whitmer, S, Wiley, M, Winnicki, S, Wohl, S, Wölfel, R, Yozwiak, N, Andersen, K, Blyden, S, Bolay, F, Carroll, M, Dahn, B, Diallo, B, Formenty, P, Fraser, C, Gao, G, Garry, R, Goodfellow, I, Günther, S, Happi, C, Holmes, E, Kellam, P, Koopmans, MPG, Loman, N, Magassouba, N, Naidoo, D, Nichol, S, Nyenswah, T, Palacios, G, Pybus, O, Sabeti, P, Sall, A, Sakoba, K, Ströeher, U, Wurie, I, Suchard, M, Lemey, P, Rambaut, A

Summary The 2013-2016 epidemic of Ebola virus disease in West Africa was of unprecedented magnitude, duration and impact. Extensive collaborative sequencing projects have produced a large collection of over 1600 Ebola virus genomes, representing over

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______1032::e31049d74fb0095e216095590c6e9bed
http://hdl.handle.net/10044/1/72324

Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules.

Autor: Lamb KD; Medical Research Council - University of Glasgow Centre for Virus Research, School of Infection and Immunity, Glasgow, Scotland, United Kingdom.; School of Computing Science, University of Glasgow, Glasgow, Scotland, United Kingdom., Luka MM; Medical Research Council - University of Glasgow Centre for Virus Research, School of Infection and Immunity, Glasgow, Scotland, United Kingdom.; School of Computing Science, University of Glasgow, Glasgow, Scotland, United Kingdom., Saathoff M; Medical Research Council - University of Glasgow Centre for Virus Research, School of Infection and Immunity, Glasgow, Scotland, United Kingdom., Orton RJ; Medical Research Council - University of Glasgow Centre for Virus Research, School of Infection and Immunity, Glasgow, Scotland, United Kingdom., Phan MVT; Medical Research Council/Uganda Virus Research Institute and London School of Hygiene & Tropical Medicine Uganda Research Unit, Entebbe, Uganda.; College of Health Solutions, Arizona State University, Phoenix, Arizona, United States of America., Cotten M; Medical Research Council - University of Glasgow Centre for Virus Research, School of Infection and Immunity, Glasgow, Scotland, United Kingdom.; Medical Research Council/Uganda Virus Research Institute and London School of Hygiene & Tropical Medicine Uganda Research Unit, Entebbe, Uganda.; College of Health Solutions, Arizona State University, Phoenix, Arizona, United States of America.; Complex Adaptive Systems Initiative, Arizona State University, Scottsdale, Arizona, United States of America., Yuan K; School of Computing Science, University of Glasgow, Glasgow, Scotland, United Kingdom.; School of Cancer Sciences, University of Glasgow, Glasgow, Scotland, United Kingdom.; Cancer Research UK Scotland Institute, Glasgow, Scotland, United Kingdom., Robertson DL; Medical Research Council - University of Glasgow Centre for Virus Research, School of Infection and Immunity, Glasgow, Scotland, United Kingdom.

Publikováno v: PLoS computational biology [PLoS Comput Biol] 2024 Jan 25; Vol. 20 (1), pp. e1011795. Date of Electronic Publication: 2024 Jan 25 (Print Publication: 2024).

SARS-CoV-2 Omicron BA.5 Infections in Vaccinated Persons, Rural Uganda.

Autor: Mugisha J, Mpairwe B, Newton R, Cotten M, Phan MVT

Publikováno v: Emerging infectious diseases [Emerg Infect Dis] 2023 Jan; Vol. 29 (1), pp. 224-226. Date of Electronic Publication: 2022 Dec 18.

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance.

Autor: Tegally H; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., San JE; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Cotten M; MRC/UVRI and LSHTM Uganda Research Unit, Entebbe, Uganda.; MRC-University of Glasgow Centre for Virus Research, Glasgow, UK., Moir M; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Tegomoh B; The Biotechnology Centre of the University of Yaoundé I, Yaoundé, Cameroon.; CDC Foundation, Atlanta, Georgia, Nebraska Department of Health and Human Services, Lincoln, NE, USA., Mboowa G; Institute of Pathogen Genomics, Africa Centres for Disease Control and Prevention (Africa CDC), Addis Ababa, Ethiopia., Martin DP; Institute of Infectious Diseases and Molecular Medicine, Department of Integrative Biomedical Sciences, Computational Biology Division, University of Cape Town, Cape Town, South Africa.; Division of Medical Virology, Wellcome Centre for Infectious Diseases in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa., Baxter C; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa., Lambisia AW; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Diallo A; Institut Pasteur de Dakar, Dakar, Senegal., Amoako DG; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa.; School of Health Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, KwaZulu-Natal, South Africa., Diagne MM; Institut Pasteur de Dakar, Dakar, Senegal., Sisay A; Department of Medical Laboratory Sciences, College of Health Sciences, Addis Ababa University, Addis Ababa, Ethiopia.; Department of Microbial, Cellular and Molecular Biology, College of Natural and Computational Sciences, Addis Ababa University, Addis Ababa, Ethiopia., Zekri AN; Cancer Biology Department, Virology and Immunology Unit, National Cancer Institute, Cairo University, Cairo, Egypt., Gueye AS; World Health Organization, Africa Region, Brazzaville, Republic of the Congo., Sangare AK; Centre d'Infectiologie Charles Mérieux-Mali (CICM-Mali), Bamako, Mali., Ouedraogo AS; Bacteriology and Virology Department Souro Sanou University Hospital, Bobo-Dioulasso, Burkina Faso., Sow A; West African Health Organisation, Bobo-Dioulasso, Burkina Faso., Musa AO; Faculty of Medicine and Health Sciences, Kassala University, Kassala City, Sudan.; Department of Microbiology, Faculty of Medical Laboratory Sciences, University of Gezira, Gezira, Sudan.; General Administration of Laboratories and Blood Banks, Ministry of Health, Kassala State, Sudan., Sesay AK; MRC Unit The Gambia at LSHTM, Fajara, Gambia., Abias AG; National Public Health Laboratory, Ministry of Health, Juba, Republic of South Sudan., Elzagheid AI; Libyan Biotechnology Research Center, Tripoli, Libya., Lagare A; Center for Medical and Sanitary Research (CERMES), Niamey, Niger., Kemi AS; The Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria., Abar AE; Laboratoire de la Caisse Nationale de Sécurité Sociale, Djibouti, Republic of Djibouti., Johnson AA; Department of Virology, College of Medicine, University of Ibadan, Ibadan, Nigeria.; Infectious Disease Institute, College of Medicine, University of Ibadan, Ibadan, Nigeria., Fowotade A; Medical Microbiology and Parasitology Department, College of Medicine, University of Ibadan, Ibadan, Nigeria.; Biorepository Clinical Virology Laboratory, College of Medicine, University of Ibadan, Ibadan, Nigeria., Oluwapelumi AO; Department of Medical Microbiology and Parasitology, Faculty of Basic Clinical Sciences, College of Health Sciences, University of Ilorin, Ilorin, Kwara State, Nigeria.; The Pirbright Institute, Woking, UK., Amuri AA; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, the Democratic Republic of the Congo.; Université de Kinshasa (UNIKIN), Kinshasa, the Democratic Republic of the Congo., Juru A; National Microbiology Reference Laboratory, Harare, Zimbabwe., Kandeil A; Center of Scientific Excellence for Influenza Viruses, National Research Centre (NRC), Cairo, Egypt., Mostafa A; Center of Scientific Excellence for Influenza Viruses, National Research Centre (NRC), Cairo, Egypt., Rebai A; Laboratory of Molecular and Cellular Screening Processes, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia., Sayed A; Genomics and Epigenomics Program, Research Department CCHE57357, Cairo, Egypt., Kazeem A; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.; Department of Biological Sciences, Faculty of Natural Sciences, Redeemer's University, Ede, Osun State, Nigeria., Balde A; Laboratório de Biologia Molecular Jean Piaget, Bissau, Guinea-Bissau.; University Jean Piaget in Guinea-Bissau, Bissau, Guinea-Bissau., Christoffels A; Institute of Pathogen Genomics, Africa Centres for Disease Control and Prevention (Africa CDC), Addis Ababa, Ethiopia.; SAMRC Bioinformatics Unit, SA Bioinformatics Institute, University of the Western Cape, Cape Town, South Africa., Trotter AJ; Quadram Institute Bioscience, Norwich, UK., Campbell A; Central Public Health Reference Laboratories, Freetown, Sierra Leone., Keita AK; Centre de Recherche et de Formation en Infectiologie de Guinée (CERFIG), Université de Conakry, Conakry, Guinea.; TransVIHMI, Institut de Recherche pour le Développement, Institut National de la Santé et de la Recherche Médicale (INSERM), Montpellier University, 34090, Montpellier, France., Kone A; University Clinical Research Center (UCRC), University of Sciences, Techniques and Technology of Bamako, Bamako, Mali., Bouzid A; Laboratory of Molecular and Cellular Screening Processes, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia.; Sharjah Institute for Medical Research, College of Medicine, University of Sharjah, Sharjah, United Arab Emirates., Souissi A; Laboratory of Molecular and Cellular Screening Processes, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia., Agweyu A; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Naguib A; Central Public Health Laboratories (CPHL), Cairo, Egypt., Gutierrez AV; Quadram Institute Bioscience, Norwich, UK., Nkeshimana A; National Institute of Public Health, Bujumbura, Burundi., Page AJ; Quadram Institute Bioscience, Norwich, UK., Yadouleton A; Laboratoire des Fièvres Hémorragiques Virales du Benin, Cotonou, Benin., Vinze A; Infectious Disease and Microbiome Program, Broad Institute of Harvard and MIT, Cambridge, MA, USA., Happi AN; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Chouikha A; Laboratory of Clinical Virology, WHO Reference Laboratory for Poliomyelitis and Measles in the Eastern Mediterranean Region, Pasteur Institute of Tunis, University Tunis El Manar (UTM), Tunis 1002, Tunisia.; Research Laboratory 'Virus, Vectors and Hosts: One Health Apporach and Technological Innovation for a Better Health', LR20IPT02, Pasteur Institute, Tunis 1002, Tunisia., Iranzadeh A; Institute of Infectious Diseases and Molecular Medicine, Department of Integrative Biomedical Sciences, Computational Biology Division, University of Cape Town, Cape Town, South Africa.; Division of Medical Virology, Wellcome Centre for Infectious Diseases in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa., Maharaj A; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Batchi-Bouyou AL; Fondation Congolaise pour la Recherche Médicale, Brazzaville, Republic of the Congo.; Marien Ngouabi, Brazzaville, Republic of the Congo., Ismail A; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa., Sylverken AA; Kwame Nkrumah University of Science and Technology, Department of Theoretical and Applied Biology, Kumasi, Ghana.; Kumasi Centre for Collaborative Research in Tropical Medicine, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana., Goba A; Viral Haemorrhagic Fever Laboratory, Kenema Government Hospital, Kenema, Sierra Leone.; Ministry of Health and Sanitation, Freetown, Sierra Leone., Femi A; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.; Department of Biological Sciences, Faculty of Natural Sciences, Redeemer's University, Ede, Osun State, Nigeria., Sijuwola AE; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Marycelin B; Department of Immunology, University of Maiduguri Teaching Hospital, P.M.B. 1414, Maiduguri, Nigeria.; Department of Medical Laboratory Science, College of Medical Sciences, University of Maiduguri, P.M.B. 1069, Maiduguri, Borno State, Nigeria., Salako BL; The Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria.; Infectious Disease Institute, College of Medicine, University of Ibadan, Ibadan, Nigeria., Oderinde BS; Department of Immunology, University of Maiduguri Teaching Hospital, P.M.B. 1414, Maiduguri, Nigeria., Bolajoko B; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Diarra B; University Clinical Research Center (UCRC), University of Sciences, Techniques and Technology of Bamako, Bamako, Mali., Herring BL; World Health Organization, Africa Region, Brazzaville, Republic of the Congo., Tsofa B; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Lekana-Douki B; Centre Interdisciplinaires de Recherches Medicales de Franceville (CIRMF), Franceville, Gabon.; Département de Parasitologie-Mycologie Université des Sciences de la Santé (USS), Libreville, Gabon., Mvula B; National HIV Reference Laboratory, Community Health Sciences Unit, Ministry of Health, Lilongwe, Malawi., Njanpop-Lafourcade BM; World Health Organization, Africa Region, Brazzaville, Republic of the Congo., Marondera BT; African Society for Laboratory Medicine, Addis Ababa, Ethiopia., Khaireh BA; National Medical and Molecular Biology Laboratory, Ministry of Health, Djibouti, Republic of Djibouti.; Africa CDC, Rapid Responder, Team Djibouti, Djibouti, Djibouti., Kouriba B; Centre d'Infectiologie Charles Mérieux-Mali (CICM-Mali), Bamako, Mali., Adu B; Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana., Pool B; Seychelles Public Health Laboratory, Public Health Authority, Ministry of Health Seychelles, Victoria, Seychelles., McInnis B; Cancer Biology Department, Virology and Immunology Unit, National Cancer Institute, Cairo University, Cairo, Egypt., Brook C; Department of Ecology and Evolution, University of Chicago, Chicago, IL, USA.; Virology Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar., Williamson C; Division of Medical Virology, Wellcome Centre for Infectious Diseases in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.; Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa.; National Health Laboratory Service (NHLS), Cape Town, South Africa., Nduwimana C; National Institute of Public Health, Bujumbura, Burundi., Anscombe C; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Blantyre, Malawi.; Liverpool School of Tropical Medicine, Liverpool, UK., Pratt CB; University of Nebraska Medical Center (UNMC), Omaha, NE, USA., Scheepers C; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa.; SAMRC Antibody Immunity Research Unit, School of Pathology, University of the Witwatersrand, Johannesburg, South Africa., Akoua-Koffi CG; CHU de Bouaké, Laboratoire/Unité de Diagnostic des Virus des Fièvres Hémorragiques et Virus Émergents, Bouaké, Côte d'Ivoire.; UFR Sciences Médicales, Universite Alassane Ouattara, Bouaké, Côte d'Ivoire., Agoti CN; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; School of Public Health, Pwani University, Kilifi, Kenya., Mapanguy CM; Fondation Congolaise pour la Recherche Médicale, Brazzaville, Republic of the Congo.; Faculty of Science and Techniques, University Marien Ngouabi, Brazzaville, Republic of the Congo., Loucoubar C; Institut Pasteur de Dakar, Dakar, Senegal., Onwuamah CK; Centre for Human Virology and Genomics, Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria., Ihekweazu C; Nigeria Centre for Disease Control and Prevention, Abuja, Nigeria., Malaka CN; Laboratoire des Arbovirus, Fièvres Hémorragiques virales, Virus Emergents et Zoonoses, Institut Pasteur de Bangui, Bangui, Central African Republic., Peyrefitte C; Institut Pasteur de Dakar, Dakar, Senegal., Grace C; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.; Department of Biological Sciences, Faculty of Natural Sciences, Redeemer's University, Ede, Osun State, Nigeria., Omoruyi CE; Medical Microbiology and Parasitology Department, College of Medicine, University of Ibadan, Ibadan, Nigeria.; Biorepository Clinical Virology Laboratory, College of Medicine, University of Ibadan, Ibadan, Nigeria., Rafaï CD; Le Laboratoire National de Biologie Clinique et de Santé Publique (LNBCSP), Bangui, Central African Republic., Morang'a CM; West African Centre for Cell Biology of Infectious Pathogens (WACCBIP), College of Basic and Applied Sciences, University of Ghana, Accra, Ghana., Erameh C; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Nigeria., Lule DB; MRC/UVRI and LSHTM Uganda Research Unit, Entebbe, Uganda., Bridges DJ; PATH, Lusaka, Zambia., Mukadi-Bamuleka D; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, the Democratic Republic of the Congo., Park D; Infectious Disease and Microbiome Program, Broad Institute of Harvard and MIT, Cambridge, MA, USA., Rasmussen DA; Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, USA.; Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA., Baker D; Quadram Institute Bioscience, Norwich, UK., Nokes DJ; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; School of Life Sciences and Zeeman Institute for Systems Biology and Infectious Disease Epidemiology Research (SBIDER), University of Warwick, Coventry, UK., Ssemwanga D; MRC/UVRI and LSHTM Uganda Research Unit, Entebbe, Uganda.; Uganda Virus Research Institute, Entebbe, Uganda., Tshiabuila D; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Amuzu DSY; West African Centre for Cell Biology of Infectious Pathogens (WACCBIP), College of Basic and Applied Sciences, University of Ghana, Accra, Ghana., Goedhals D; PathCare Vermaak, Pretoria, South Africa and Division of Virology, University of the Free State, Bloemfontein, South Africa., Grant DS; Viral Haemorrhagic Fever Laboratory, Kenema Government Hospital, Kenema, Sierra Leone.; Ministry of Health and Sanitation, Freetown, Sierra Leone.; College of Medicine and Allied Health Sciences, University of Sierra Leone, Freetown, Sierra Leone., Omuoyo DO; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Maruapula D; Botswana Harvard AIDS Institute Partnership and Botswana Harvard HIV Reference Laboratory, Gaborone, Botswana., Wanjohi DW; Institute of Pathogen Genomics, Africa Centres for Disease Control and Prevention (Africa CDC), Addis Ababa, Ethiopia., Foster-Nyarko E; Quadram Institute Bioscience, Norwich, UK., Lusamaki EK; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, the Democratic Republic of the Congo.; Université de Kinshasa (UNIKIN), Kinshasa, the Democratic Republic of the Congo.; TransVIHMI, Institut de Recherche pour le Développement, Institut National de la Santé et de la Recherche Médicale (INSERM), Montpellier University, 34090, Montpellier, France., Simulundu E; Macha Research Trust, Choma, Zambia., Ong'era EM; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Ngabana EN; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, the Democratic Republic of the Congo.; Université de Kinshasa (UNIKIN), Kinshasa, the Democratic Republic of the Congo., Abworo EO; International Livestock Research Institute (ILRI), Nairobi, Kenya., Otieno E; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Shumba E; African Society for Laboratory Medicine, Addis Ababa, Ethiopia., Barasa E; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Ahmed EB; INRSP, Nouakchott, Mauritania.; Faculté de Médecine de Nouakchott, Nouakchott, Mauritani., Ahmed EA; Department of Microbiology, Faculty of Medical Laboratory Sciences, University of Gezira, Gezira, Sudan., Lokilo E; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, the Democratic Republic of the Congo., Mukantwari E; Rwanda National Reference Laboratory, Kigali, Rwanda., Philomena E; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Belarbi E; Robert Koch-Institute, Berlin, Germany., Simon-Loriere E; G5 Evolutionary Genomics of RNA Viruses, Institut Pasteur, Paris, France., Anoh EA; CHU de Bouaké, Laboratoire/Unité de Diagnostic des Virus des Fièvres Hémorragiques et Virus Émergents, Bouaké, Côte d'Ivoire., Manuel E; Direcção Nacional da Saúde Pública, Ministério da Saúde, Luanda, Angola., Leendertz F; Robert Koch-Institute, Berlin, Germany., Taweh FM; National Public Health Reference Laboratory-National Public Health Institute of Liberia, Monrovia, Liberia., Wasfi F; Laboratory of Clinical Virology, WHO Reference Laboratory for Poliomyelitis and Measles in the Eastern Mediterranean Region, Pasteur Institute of Tunis, University Tunis El Manar (UTM), Tunis 1002, Tunisia., Abdelmoula F; Laboratory of Molecular and Cellular Screening Processes, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia.; Faculty of Pharmacy of Monastir, Monastir, Tunisia., Takawira FT; National Microbiology Reference Laboratory, Harare, Zimbabwe., Derrar F; National Influenza Centre, Institut Pasteur d'Algérie, Algiers, Algeria., Ajogbasile FV; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Treurnicht F; Department of Virology, National Health Laboratory Service (NHLS), Charlotte Maxeke Johannesburg Academic Hospital, Johannesburg, South Africa.; School of Pathology, Faculty of Health Science, University of the Witwatersrand, Johannesburg, South Africa., Onikepe F; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.; Department of Biological Sciences, Faculty of Natural Sciences, Redeemer's University, Ede, Osun State, Nigeria., Ntoumi F; Fondation Congolaise pour la Recherche Médicale, Brazzaville, Republic of the Congo.; Institute of Tropical Medicine, Universitätsklinikum Tübingen, Tübingen, Germany., Muyembe FM; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, the Democratic Republic of the Congo.; Université de Kinshasa (UNIKIN), Kinshasa, the Democratic Republic of the Congo., Ragomzingba FEZ; Ministère de Santé Publique et de la Solidarité Nationale, Ndjamena, Chad., Dratibi FA; WHO Int Comoros, Moroni, Union of Comoros.; World Health Organization, Africa Region, Brazzaville, Republic of the Congo., Iyanu FA; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Mbunsu GK; Université de Kinshasa (UNIKIN), Kinshasa, the Democratic Republic of the Congo., Thilliez G; Quadram Institute Bioscience, Norwich, UK., Kay GL; Quadram Institute Bioscience, Norwich, UK., Akpede GO; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Nigeria., van Zyl GU; Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, Cape Town, South Africa.; National Health Laboratory Service (NHLS), Tygerberg, Cape Town, South Africa., Awandare GA; West African Centre for Cell Biology of Infectious Pathogens (WACCBIP), College of Basic and Applied Sciences, University of Ghana, Accra, Ghana., Kpeli GS; UHAS COVID-19 Testing and Research Centre, University of Health and Allied Sciences, Ho, Ghana.; Department of Biomedical Sciences, University of Health and Allied Sciences, PMB 31, Ho, Ghana., Schubert G; Robert Koch-Institute, Berlin, Germany., Maphalala GP; Ministry of Health, COVID-19 Testing Laboratory, Mbabane, Kingdom of Eswatini., Ranaivoson HC; Virology Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar., Omunakwe HE; Satellite Molecular Laboratory, Rivers State University Teaching Hospital, Port Harcourt, Nigeria., Onywera H; Institute of Pathogen Genomics, Africa Centres for Disease Control and Prevention (Africa CDC), Addis Ababa, Ethiopia., Abe H; Department of Emerging Infectious Diseases, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan., Karray H; CHU Habib Bourguiba, Laboratory of Microbiology, Faculty of Medicine of Sfax, University of Sfax, Sfax, Tunisia., Nansumba H; Central Public Health Laboratories (CPHL), Kampala, Uganda., Triki H; Laboratory of Clinical Virology, WHO Reference Laboratory for Poliomyelitis and Measles in the Eastern Mediterranean Region, Pasteur Institute of Tunis, University Tunis El Manar (UTM), Tunis 1002, Tunisia., Kadjo HAA; Institut Pasteur de Côte d'Ivoire, Departement des Virus Epidemiques, Abidjan, Côte d'Ivoire., Elgahzaly H; Faculty of Medicine Ain Shams Research Institute (MASRI), Ain Shams University, Cairo, Egypt., Gumbo H; National Microbiology Reference Laboratory, Harare, Zimbabwe., Mathieu H; Doctoral School of Technical and Environmental Sciences, Department of Biology and Human Health, N'Djamena, Chad., Kavunga-Membo H; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, the Democratic Republic of the Congo., Smeti I; Laboratory of Molecular and Cellular Screening Processes, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia., Olawoye IB; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Adetifa IMO; Nigeria Centre for Disease Control and Prevention, Abuja, Nigeria.; Department of Infectious Diseases Epidemiology, London School of Hygiene and Tropical Medicine, London, UK., Odia I; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Nigeria., Ben Boubaker IB; Charles Nicolle Hospital, Laboratory of Microbiology, National Influenza Center, Tunis, Tunisia.; University of Tunis El Manar, Faculty of Medicine of Tunis, Research Laboratory LR99ES09, Tunis, Tunisia., Muhammad IA; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Ssewanyana I; Central Public Health Laboratories (CPHL), Kampala, Uganda., Wurie I; College of Medicine and Allied Health Science, University of Sierra Leone, Freetown, Sierra Leone., Konstantinus IS; Namibia Institute of Pathology, Windhoek, Namibia., Halatoko JWA; National Institute of Hygiene, Lomé, Togo., Ayei J; National Public Health Laboratory, Ministry of Health, Juba, Republic of South Sudan., Sonoo J; Virology/Molecular Biology Department, Central Health Laboratory, Victoria Hospital, Ministry of Health and Wellness, Port Louis, Mauritius., Makangara JC; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, the Democratic Republic of the Congo.; Université de Kinshasa (UNIKIN), Kinshasa, the Democratic Republic of the Congo., Tamfum JM; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, the Democratic Republic of the Congo.; Université de Kinshasa (UNIKIN), Kinshasa, the Democratic Republic of the Congo., Heraud JM; Institut Pasteur de Dakar, Dakar, Senegal.; Virology Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar., Shaffer JG; Department of Biostatistics and Data Science, School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA, USA., Giandhari J; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Musyoki J; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Nkurunziza J; WHO Burundi, Gitega, Burundi., Uwanibe JN; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Bhiman JN; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa.; School of Pathology, Faculty of Health Science, University of the Witwatersrand, Johannesburg, South Africa., Yasuda J; Department of Emerging Infectious Diseases, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan., Morais J; Grupo de Investigação Microbiana e Imunológica, Instituto Nacional de Investigação em Saúde (National Institute for Health Research), Luanda, Angola.; Departamento de Bioquímica, Faculdade de Medicina, Universidade Agostinho Neto, Luanda, Angola., Kiconco J; Uganda Virus Research Institute, Entebbe, Uganda., Sandi JD; Viral Haemorrhagic Fever Laboratory, Kenema Government Hospital, Kenema, Sierra Leone.; Ministry of Health and Sanitation, Freetown, Sierra Leone., Huddleston J; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA., Odoom JK; Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana., Morobe JM; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Gyapong JO; UHAS COVID-19 Testing and Research Centre, University of Health and Allied Sciences, Ho, Ghana., Kayiwa JT; MRC/UVRI and LSHTM Uganda Research Unit, Entebbe, Uganda., Okolie JC; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Xavier JS; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.; Institute of Agricultural Sciences, Universidade Federal dos Vales do Jequitinhonha e Mucuri, Unaí, Brazil., Gyamfi J; UHAS COVID-19 Testing and Research Centre, University of Health and Allied Sciences, Ho, Ghana., Wamala JF; WHO South Sudan, Juba, South Sudan., Bonney JHK; Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana., Nyandwi J; National Institute of Public Health, Bujumbura, Burundi.; Faculty of Medicine, University of Burundi, Bujumbura, Burundi., Everatt J; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa., Nakaseegu J; Uganda Virus Research Institute, Entebbe, Uganda., Ngoi JM; West African Centre for Cell Biology of Infectious Pathogens (WACCBIP), College of Basic and Applied Sciences, University of Ghana, Accra, Ghana., Namulondo J; Uganda Virus Research Institute, Entebbe, Uganda., Oguzie JU; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.; Department of Biological Sciences, Faculty of Natural Sciences, Redeemer's University, Ede, Osun State, Nigeria., Andeko JC; Centre Interdisciplinaires de Recherches Medicales de Franceville (CIRMF), Franceville, Gabon., Lutwama JJ; MRC/UVRI and LSHTM Uganda Research Unit, Entebbe, Uganda., Mogga JJH; WHO South Sudan, Juba, South Sudan., O'Grady J; Quadram Institute Bioscience, Norwich, UK., Siddle KJ; Infectious Disease and Microbiome Program, Broad Institute of Harvard and MIT, Cambridge, MA, USA., Victoir K; Pasteur Network, Institut Pasteur, Paris, France., Adeyemi KT; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.; Department of Biological Sciences, Faculty of Natural Sciences, Redeemer's University, Ede, Osun State, Nigeria., Tumedi KA; Botswana Institute for Technology Research and Innovation, Gaborone, Botswana., Carvalho KS; Instituto Nacional de Saúde Pública, Praia, Cape Verde., Mohammed KS; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Dellagi K; Pasteur Network, Institut Pasteur, Paris, France., Musonda KG; Zambia National Public Health Institute, Lusaka, Zambia., Duedu KO; UHAS COVID-19 Testing and Research Centre, University of Health and Allied Sciences, Ho, Ghana.; Department of Biomedical Sciences, University of Health and Allied Sciences, PMB 31, Ho, Ghana., Fki-Berrajah L; CHU Habib Bourguiba, Laboratory of Microbiology, Faculty of Medicine of Sfax, University of Sfax, Sfax, Tunisia., Singh L; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Kepler LM; Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, USA.; Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA., Biscornet L; Seychelles Public Health Laboratory, Public Health Authority, Ministry of Health Seychelles, Victoria, Seychelles., de Oliveira Martins L; Quadram Institute Bioscience, Norwich, UK., Chabuka L; Public Health Institute of Malawi, Lilongwe, Malawi., Olubayo L; Institute of Infectious Diseases and Molecular Medicine, Department of Integrative Biomedical Sciences, Computational Biology Division, University of Cape Town, Cape Town, South Africa., Ojok LD; National Public Health Laboratory, Ministry of Health, Juba, Republic of South Sudan., Deng LL; National Public Health Laboratory, Ministry of Health, Juba, Republic of South Sudan., Ochola-Oyier LI; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Tyers L; Division of Medical Virology, Wellcome Centre for Infectious Diseases in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa., Mine M; National Health Laboratory, Gaborone, Botswana., Ramuth M; Virology/Molecular Biology Department, Central Health Laboratory, Victoria Hospital, Ministry of Health and Wellness, Port Louis, Mauritius., Mastouri M; Laboratory of Transmissible Diseases and Biologically Active Substances (LR99ES27), Faculty of Pharmacy, University of Monastir, Monastir, Tunisia.; Laboratory of Microbiology, University Hospital of Monastir, Monastir, Tunisia., ElHefnawi M; Biomedical Informatics and Chemoinformatics Group, Informatics and Systems Department, National Research Centre, Cairo, Egypt., Mbanne M; Institut Pasteur de Dakar, Dakar, Senegal., Matsheka MI; Botswana Institute for Technology Research and Innovation, Gaborone, Botswana., Kebabonye M; Ministry of Health and Wellness, Gaborone, Botswana., Diop M; Institut Pasteur de Dakar, Dakar, Senegal., Momoh M; Viral Haemorrhagic Fever Laboratory, Kenema Government Hospital, Kenema, Sierra Leone.; Ministry of Health and Sanitation, Freetown, Sierra Leone.; Eastern Technical University of Sierra Leone, Kenema, Sierra Leone., Lima Mendonça MDL; Instituto Nacional de Saúde Pública, Praia, Cape Verde., Venter M; Zoonotic Arbo and Respiratory Virus Program, Centre for Viral Zoonoses, Department of Medical Virology, University of Pretoria, Pretoria, South Africa., Paye MF; Infectious Disease and Microbiome Program, Broad Institute of Harvard and MIT, Cambridge, MA, USA., Faye M; Institut Pasteur de Dakar, Dakar, Senegal., Nyaga MM; Next Generation Sequencing Unit and Division of Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein, South Africa., Mareka M; National Reference Laboratory Lesotho, Maseru, Lesotho., Damaris MM; Centre for Biotechnology Research and Development, Kenya Medical Research Institute, Nairobi, Kenya., Mburu MW; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Mpina MG; Swiss Tropical and Public Health Institute, Basel, Switzerland.; Laboratorio de Investigaciones de Baney, Baney, Equatorial Guinea.; Ifakara Health Insitute, Ifakara, Tanzania., Owusu M; Department of Medical Diagnostics, Kumasi Centre for Collaborative Research in Tropical Medicine, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana., Wiley MR; University of Nebraska Medical Center (UNMC), Omaha, NE, USA.; PraesensBio, Lincoln, NE, USA., Tatfeng MY; Department of Medical Laboratory Science, Niger Delta University, Bayelsa State, Nigeria., Ayekaba MO; Laboratorio de Investigaciones de Baney, Baney, Equatorial Guinea., Abouelhoda M; Systems and Biomedical Engineering Department, Faculty of Engineering, Cairo University, Cairo, Egypt.; King Faisal Specialist Hospital and Research Center, Riyadh, Kingdom of Saudi Arabia., Beloufa MA; National Influenza Centre, Institut Pasteur d'Algérie, Algiers, Algeria., Seadawy MG; Biological Prevention Department, Ministry of Defence, Cairo, Egypt.; Faculty of Science, Fayoum University, Fayoum, Egypt., Khalifa MK; Molecular Pathology Lab, Children's Cancer Hospital, Cairo, Egypt., Matobo MM; National Reference Laboratory Lesotho, Maseru, Lesotho., Kane M; Institut Pasteur de Dakar, Dakar, Senegal., Salou M; LaboratoireBiolim FSS/Université de Lomé, Lomé, Togo., Mbulawa MB; Ministry of Health and Wellness, Gaborone, Botswana., Mwenda M; PATH, Lusaka, Zambia., Allam M; Department of Genetics and Genomics, College of Medicine and Health Sciences, United Arab Emirates University, Abu Dhabi, United Arab Emirates., Phan MVT; MRC/UVRI and LSHTM Uganda Research Unit, Entebbe, Uganda., Abid N; Laboratory of Transmissible Diseases and Biologically Active Substances (LR99ES27), Faculty of Pharmacy, University of Monastir, Monastir, Tunisia.; High Institute of Biotechnology of Monastir, University of Monastir, Rue Taher Haddad 5000, Monastir, Tunisia., Rujeni N; Rwanda National Joint Task Force COVID-19, Rwanda Biomedical Centre, Ministry of Health, Kigali, Rwanda.; School of Health Sciences, College of Medicine and Health Sciences, University of Rwanda, Kigali, Rwanda., Abuzaid N; Department of Microbiology, Faculty of Medical Laboratory Sciences, Omdurman Islamic University, Sudan., Ismael N; Instituto Nacional de Saúde (INS), Marracuene, Mozambique., Elguindy N; Central Public Health Laboratories (CPHL), Cairo, Egypt., Top NM; Institut Pasteur de Dakar, Dakar, Senegal., Dia N; Institut Pasteur de Dakar, Dakar, Senegal., Mabunda N; Instituto Nacional de Saúde (INS), Marracuene, Mozambique., Hsiao NY; Division of Medical Virology, Wellcome Centre for Infectious Diseases in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.; National Health Laboratory Service (NHLS), Cape Town, South Africa., Silochi NB; Laboratorio de Investigaciones de Baney, Baney, Equatorial Guinea., Francisco NM; Grupo de Investigação Microbiana e Imunológica, Instituto Nacional de Investigação em Saúde (National Institute for Health Research), Luanda, Angola., Saasa N; Department of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka, Zambia., Bbosa N; MRC/UVRI and LSHTM Uganda Research Unit, Entebbe, Uganda., Murunga N; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Gumede N; World Health Organization, Africa Region, Brazzaville, Republic of the Congo., Wolter N; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa.; School of Pathology, Faculty of Health Science, University of the Witwatersrand, Johannesburg, South Africa., Sitharam N; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Ndodo N; Nigeria Centre for Disease Control and Prevention, Abuja, Nigeria., Ajayi NA; Internal Medicine Department, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria., Tordo N; Institut Pasteur de Guinée, Conarky, Guinea., Mbhele N; Division of Medical Virology, Wellcome Centre for Infectious Diseases in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa., Razanajatovo NH; Virology Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar., Iguosadolo N; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Mba N; Nigeria Centre for Disease Control and Prevention, Abuja, Nigeria., Kingsley OC; Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria., Sylvanus O; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Nigeria., Femi O; Department of Epidemiology and Community Health, Faculty of Clinical Sciences. College of Health Sciences. University of Ilorin, Ilorin, Kwara State, Nigeria., Adewumi OM; Department of Virology, College of Medicine, University of Ibadan, Ibadan, Nigeria.; Infectious Disease Institute, College of Medicine, University of Ibadan, Ibadan, Nigeria., Testimony O; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.; Department of Biological Sciences, Faculty of Natural Sciences, Redeemer's University, Ede, Osun State, Nigeria., Ogunsanya OA; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Fakayode O; Department of Public Health, Ministry of Health, Ilorin, Kwara State, Nigeria., Ogah OE; Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria., Oludayo OE; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Faye O; Institut Pasteur de Dakar, Dakar, Senegal., Smith-Lawrence P; Ministry of Health and Wellness, Gaborone, Botswana., Ondoa P; African Society for Laboratory Medicine, Addis Ababa, Ethiopia., Combe P; Mayotte Hospital Center, Mayotte, France., Nabisubi P; The African Center of Excellence in Bioinformatics and Data-Intensive Sciences, The Infectious Diseases Institute, Kampala, Uganda.; Immunology and Molecular Biology, Makerere University, Kampala, Uganda., Semanda P; Central Public Health Laboratories (CPHL), Kampala, Uganda., Oluniyi PE; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Arnaldo P; Instituto Nacional de Saúde (INS), Marracuene, Mozambique., Quashie PK; West African Centre for Cell Biology of Infectious Pathogens (WACCBIP), College of Basic and Applied Sciences, University of Ghana, Accra, Ghana., Okokhere PO; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Nigeria.; Department of Medicine, Faculty of Clinical Sciences, College of Medicine, Ambrose Alli University, Ekpoma, Edo State, Nigeria., Bejon P; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Dussart P; Virology Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar., Bester PA; Division of Virology, National Health Laboratory Service and University of the Free State, Bloemfontein, South Africa., Mbala PK; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, the Democratic Republic of the Congo.; Université de Kinshasa (UNIKIN), Kinshasa, the Democratic Republic of the Congo., Kaleebu P; MRC/UVRI and LSHTM Uganda Research Unit, Entebbe, Uganda.; Uganda Virus Research Institute, Entebbe, Uganda., Abechi P; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.; Department of Biological Sciences, Faculty of Natural Sciences, Redeemer's University, Ede, Osun State, Nigeria., El-Shesheny R; Center of Scientific Excellence for Influenza Viruses, National Research Centre (NRC), Cairo, Egypt.; Infectious Hazards Preparedness, World Health Organization, Eastern Mediterranean Regional Office, Cairo, Egypt., Joseph R; Division of Medical Virology, Wellcome Centre for Infectious Diseases in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa., Aziz RK; Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, Cairo, Egypt.; Microbiology and Immunology Research Program, Children's Cancer Hospital Egypt, Cairo, Egypt., Essomba RG; National Public Health Laboratory, Ministry of Public Health of Cameroon, Yaoundé, Cameroon.; Faculty of Medicine and Biomedical Sciences, University of Yaoundé, Yaoundé, Cameroon., Ayivor-Djanie R; West African Centre for Cell Biology of Infectious Pathogens (WACCBIP), College of Basic and Applied Sciences, University of Ghana, Accra, Ghana.; UHAS COVID-19 Testing and Research Centre, University of Health and Allied Sciences, Ho, Ghana.; Department of Biomedical Sciences, University of Health and Allied Sciences, PMB 31, Ho, Ghana., Njouom R; Virology Service, Centre Pasteur of Cameroun, Yaounde, Cameroon., Phillips RO; Kumasi Centre for Collaborative Research in Tropical Medicine, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana., Gorman R; Kumasi Centre for Collaborative Research in Tropical Medicine, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana., Kingsley RA; Quadram Institute Bioscience, Norwich, UK., Neto Rodrigues RMDESA; Coordenadora da rede do Diagnóstico Tuberculose/HIV/COVID-19 na Instituição - Laboratório Nacional de Referência da Tuberculose em São Tomé e Príncipe, São Tomé, São Tomé and Principe.; Ponto focal para Melhoria da qualidade dos Laboratórios (SLIPTA) ao nível de São Tomé e Príncipe, São Tomé, São Tomé and Principe., Audu RA; The Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria., Carr RAA; UHAS COVID-19 Testing and Research Centre, University of Health and Allied Sciences, Ho, Ghana.; Department of Biomedical Sciences, University of Health and Allied Sciences, PMB 31, Ho, Ghana., Gargouri S; CHU Habib Bourguiba, Laboratory of Microbiology, Faculty of Medicine of Sfax, University of Sfax, Sfax, Tunisia., Masmoudi S; Laboratory of Molecular and Cellular Screening Processes, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia., Bootsma S; WHO South Sudan, Juba, South Sudan., Sankhe S; Institut Pasteur de Dakar, Dakar, Senegal., Mohamed SI; National Public Health Reference Laboratory (NPHRL), Mogadishu, Somalia., Femi S; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Mhalla S; University of Tunis El Manar, Faculty of Medicine of Tunis, Research Laboratory LR99ES09, Tunis, Tunisia.; Faculty of Medicine of Monastir, University of Monastir, Monastir, Tunisia., Hosch S; Swiss Tropical and Public Health Institute, Basel, Switzerland.; University of Basel, Basel, Switzerland., Kassim SK; Faculty of Medicine Ain Shams Research Institute (MASRI), Ain Shams University, Cairo, Egypt., Metha S; Infectious Disease and Microbiome Program, Broad Institute of Harvard and MIT, Cambridge, MA, USA., Trabelsi S; Clinical and Experimental Pharmacology Lab, LR16SP02, National Center of Pharmacovigilance, University of Tunis El Manar, Tunis, Tunisia., Agwa SH; Faculty of Medicine Ain Shams Research Institute (MASRI), Ain Shams University, Cairo, Egypt., Mwangi SW; Institute of Pathogen Genomics, Africa Centres for Disease Control and Prevention (Africa CDC), Addis Ababa, Ethiopia., Doumbia S; University Clinical Research Center (UCRC), University of Sciences, Techniques and Technology of Bamako, Bamako, Mali., Makiala-Mandanda S; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, the Democratic Republic of the Congo.; Université de Kinshasa (UNIKIN), Kinshasa, the Democratic Republic of the Congo., Aryeetey S; Kumasi Centre for Collaborative Research in Tropical Medicine, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana., Ahmed SS; Central Public Health Laboratories (CPHL), Cairo, Egypt., Ahmed SM; INRSP, Nouakchott, Mauritania., Elhamoumi S; Infectious Disease and Microbiome Program, Broad Institute of Harvard and MIT, Cambridge, MA, USA., Moyo S; Botswana Harvard AIDS Institute Partnership and Botswana Harvard HIV Reference Laboratory, Gaborone, Botswana.; Harvard T.H. Chan School of Public Health, Boston, MA, USA., Lutucuta S; Grupo de Investigação Microbiana e Imunológica, Instituto Nacional de Investigação em Saúde (National Institute for Health Research), Luanda, Angola., Gaseitsiwe S; Botswana Harvard AIDS Institute Partnership and Botswana Harvard HIV Reference Laboratory, Gaborone, Botswana.; Harvard T.H. Chan School of Public Health, Boston, MA, USA., Jalloh S; Viral Haemorrhagic Fever Laboratory, Kenema Government Hospital, Kenema, Sierra Leone.; Ministry of Health and Sanitation, Freetown, Sierra Leone., Andriamandimby SF; Virology Unit, Institut Pasteur de Madagascar, Antananarivo, Madagascar., Oguntope S; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Grayo S; Institut Pasteur de Guinée, Conarky, Guinea., Lekana-Douki S; Centre Interdisciplinaires de Recherches Medicales de Franceville (CIRMF), Franceville, Gabon., Prosolek S; Quadram Institute Bioscience, Norwich, UK., Ouangraoua S; Centre MURAZ, Ouagadougou, Burkina Faso.; National Institute of Public Health of Burkina Faso (INSP/BF), Ouagadougou, Burkina Faso., van Wyk S; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Schaffner SF; Infectious Disease and Microbiome Program, Broad Institute of Harvard and MIT, Cambridge, MA, USA., Kanyerezi S; The African Center of Excellence in Bioinformatics and Data-Intensive Sciences, The Infectious Diseases Institute, Kampala, Uganda.; Immunology and Molecular Biology, Makerere University, Kampala, Uganda., Ahuka-Mundeke S; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, the Democratic Republic of the Congo.; Université de Kinshasa (UNIKIN), Kinshasa, the Democratic Republic of the Congo., Rudder S; Quadram Institute Bioscience, Norwich, UK., Pillay S; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Nabadda S; Central Public Health Laboratories (CPHL), Kampala, Uganda., Behillil S; National Reference Center for Respiratory Viruses, Molecular Genetics of RNA Viruses, UMR 3569 CNRS, Université Paris Cité, Institut Pasteur, Paris, France., Budiaki SL; National Reference Laboratory Lesotho, Maseru, Lesotho., van der Werf S; National Reference Center for Respiratory Viruses, Molecular Genetics of RNA Viruses, UMR 3569 CNRS, Université Paris Cité, Institut Pasteur, Paris, France., Mashe T; National Microbiology Reference Laboratory, Harare, Zimbabwe.; World Health Organization, Harare, Zimbabwe., Mohale T; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa., Le-Viet T; Quadram Institute Bioscience, Norwich, UK., Velavan TP; Institute of Tropical Medicine, Universitätsklinikum Tübingen, Tübingen, Germany.; Vietnamese-German Center for Medical Research, Hanoi, Vietnam., Schindler T; Swiss Tropical and Public Health Institute, Basel, Switzerland.; Laboratorio de Investigaciones de Baney, Baney, Equatorial Guinea.; University of Basel, Basel, Switzerland., Maponga TG; Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, Cape Town, South Africa., Bedford T; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.; Howard Hughes Medical Institute, Fred Hutchinson Cancer Center, Seattle, WA, USA., Anyaneji UJ; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Chinedu U; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.; Department of Biological Sciences, Faculty of Natural Sciences, Redeemer's University, Ede, Osun State, Nigeria., Ramphal U; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.; Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa.; Sub-Saharan African Network For TB/HIV Research Excellence (SANTHE), Durban, South Africa., George UE; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Enouf V; National Reference Center for Respiratory Viruses, Molecular Genetics of RNA Viruses, UMR 3569 CNRS, Université Paris Cité, Institut Pasteur, Paris, France., Nene V; International Livestock Research Institute (ILRI), Nairobi, Kenya., Gorova V; World Health Organization, WHO Lesotho, Maseru, Lesotho.; Med24 Medical Centre, Ruwa, Zimbabwe., Roshdy WH; Central Public Health Laboratories (CPHL), Cairo, Egypt., Karim WA; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Ampofo WK; Department of Virology, Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana., Preiser W; Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, Cape Town, South Africa.; National Health Laboratory Service (NHLS), Tygerberg, Cape Town, South Africa., Choga WT; Botswana Harvard AIDS Institute Partnership and Botswana Harvard HIV Reference Laboratory, Gaborone, Botswana.; Division of Human Genetics, Department of Pathology, University of Cape Town, Cape Town, South Africa., Ahmed YA; World Health Organization, Africa Region, Brazzaville, Republic of the Congo., Ramphal Y; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Bediako Y; West African Centre for Cell Biology of Infectious Pathogens (WACCBIP), College of Basic and Applied Sciences, University of Ghana, Accra, Ghana.; Yemaachi Biotech, Accra, Ghana., Naidoo Y; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Butera Y; Rwanda National Joint Task Force COVID-19, Rwanda Biomedical Centre, Ministry of Health, Kigali, Rwanda.; Center for Human Genetics, College of Medicine and Health Sciences, University of Rwanda, Kigali, Rwanda.; Laboratory of Human Genetics, GIGA Research Institute, Liège, Belgium., de Laurent ZR; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Ouma AEO; Institute of Pathogen Genomics, Africa Centres for Disease Control and Prevention (Africa CDC), Addis Ababa, Ethiopia., von Gottberg A; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa.; School of Pathology, Faculty of Health Science, University of the Witwatersrand, Johannesburg, South Africa., Githinji G; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Department of Biochemistry and Biotechnology, Pwani University, Kilifi, Kenya., Moeti M; World Health Organization, Africa Region, Brazzaville, Republic of the Congo., Tomori O; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria., Sabeti PC; Infectious Disease and Microbiome Program, Broad Institute of Harvard and MIT, Cambridge, MA, USA., Sall AA; Institut Pasteur de Dakar, Dakar, Senegal., Oyola SO; International Livestock Research Institute (ILRI), Nairobi, Kenya., Tebeje YK; Institute of Pathogen Genomics, Africa Centres for Disease Control and Prevention (Africa CDC), Addis Ababa, Ethiopia., Tessema SK; Institute of Pathogen Genomics, Africa Centres for Disease Control and Prevention (Africa CDC), Addis Ababa, Ethiopia., de Oliveira T; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.; Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa.; Department of Global Health, University of Washington, Seattle, WA, USA., Happi C; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.; Department of Biological Sciences, Faculty of Natural Sciences, Redeemer's University, Ede, Osun State, Nigeria., Lessells R; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Nkengasong J; Institute of Pathogen Genomics, Africa Centres for Disease Control and Prevention (Africa CDC), Addis Ababa, Ethiopia., Wilkinson E; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.

Publikováno v: Science (New York, N.Y.) [Science] 2022 Oct 07; Vol. 378 (6615), pp. eabq5358. Date of Electronic Publication: 2022 Oct 07.