Zobrazeno 1 - 10
of 743
pro vyhledávání: '"Petras J"'
Publikováno v:
Frontiers in Molecular Biosciences, Vol 9 (2022)
Association of proteins to a significant extent is determined by their geometric complementarity. Large-scale recognition factors, which directly relate to the funnel-like intermolecular energy landscape, provide important insights into the basic rul
Externí odkaz:
https://doaj.org/article/cea96feb9c0b460a985b8d5bece21ab8
Publikováno v:
PLoS ONE, Vol 17, Iss 5, p e0267531 (2022)
Membrane proteins are significantly underrepresented in Protein Data Bank despite their essential role in cellular mechanisms and the major progress in experimental protein structure determination. Thus, computational approaches are especially valuab
Externí odkaz:
https://doaj.org/article/f5bc5034f8774af185bdaf4e26ca8ab6
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-10 (2018)
Abstract Background Structural modeling of protein-protein interactions produces a large number of putative configurations of the protein complexes. Identification of the near-native models among them is a serious challenge. Publicly available result
Externí odkaz:
https://doaj.org/article/fe32a6b9a16d4c9b8f5f91062e1e42a1
Publikováno v:
PLoS Computational Biology, Vol 12, Iss 9, p e1005120 (2016)
Protein-RNA complexes formed by specific recognition between RNA and RNA-binding proteins play an important role in biological processes. More than a thousand of such proteins in human are curated and many novel RNA-binding proteins are to be discove
Externí odkaz:
https://doaj.org/article/363fd47820c94116be42228bdbac87a2
Publikováno v:
PLoS Computational Biology, Vol 11, Iss 12, p e1004630 (2015)
The rapidly growing amount of publicly available information from biomedical research is readily accessible on the Internet, providing a powerful resource for predictive biomolecular modeling. The accumulated data on experimentally determined structu
Externí odkaz:
https://doaj.org/article/0a35e61809894e0988c38352238545a8
Publikováno v:
PLoS ONE, Vol 7, Iss 2, p e31349 (2012)
The increasing availability of co-crystallized protein-protein complexes provides an opportunity to use template-based modeling for protein-protein docking. Structure alignment techniques are useful in detection of remote target-template similarities
Externí odkaz:
https://doaj.org/article/6aa121e202674204a75f4d657eb83227
Publikováno v:
Journal of Chemical Physics; 9/7/2024, Vol. 161 Issue 9, p1-10, 10p
Autor:
Petras J Kundrotas, Ilya A Vakser
Publikováno v:
PLoS Computational Biology, Vol 6, Iss 4, p e1000727 (2010)
The accuracy of protein structures, particularly their binding sites, is essential for the success of modeling protein complexes. Computationally inexpensive methodology is required for genome-wide modeling of such structures. For systematic evaluati
Externí odkaz:
https://doaj.org/article/39d7305f1afd4bd1be3d984bb6ae30a6
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