Stem-loop-induced ribosome queuing in the uORF2/ATF4 overlap fine-tunes stress-induced human ATF4 translational control.

Autor: Smirnova AM; Laboratory of Regulation of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague, Czech Republic., Hronová V; Laboratory of Regulation of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague, Czech Republic., Mohammad MP; Laboratory of Regulation of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague, Czech Republic., Herrmannová A; Laboratory of Regulation of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague, Czech Republic., Gunišová S; Laboratory of Regulation of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague, Czech Republic., Petráčková D; Laboratory of Post-transcriptional Control of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague, Czech Republic., Halada P; Laboratory of Structural Biology and Cell Signaling, Institute of Microbiology of the Czech Academy of Sciences, Prumyslova 595, 252 50 Vestec, Czech Republic., Coufal Š; Laboratory of Cellular and Molecular Immunology, Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague, Czech Republic., Świrski M; Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland., Rendleman J; Department of Biology, New York University, New York, NY, USA., Jendruchová K; Laboratory of Regulation of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague, Czech Republic., Hatzoglou M; Department of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH, USA., Beznosková P; Laboratory of Regulation of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague, Czech Republic., Vogel C; Department of Biology, New York University, New York, NY, USA. Electronic address: cvogel@nyu.edu., Valášek LS; Laboratory of Regulation of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague, Czech Republic. Electronic address: valasekl@biomed.cas.cz.

Publikováno v: Cell reports [Cell Rep] 2024 Apr 23; Vol. 43 (4), pp. 113976. Date of Electronic Publication: 2024 Mar 19.

T3SS chaperone of the CesT family is required for secretion of the anti-sigma factor BtrA in Bordetella pertussis .

Autor: Držmíšek J; Laboratory of post-transcriptional control of gene expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic., Petráčková D; Laboratory of post-transcriptional control of gene expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic., Dienstbier A; Laboratory of post-transcriptional control of gene expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic., Čurnová I; Laboratory of post-transcriptional control of gene expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic., Večerek B; Laboratory of post-transcriptional control of gene expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic.

Publikováno v: Emerging microbes & infections [Emerg Microbes Infect] 2023 Dec; Vol. 12 (2), pp. 2272638. Date of Electronic Publication: 2023 Nov 01.

Transcriptional profiling of human macrophages during infection with Bordetella pertussis .

Autor: Petráčková D; Institute of Microbiology of the Czech Academy of Sciences, Laboratory of Post-transcriptional Control of Gene Expression, Prague, Czech Republic., Farman MR; Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria., Amman F; Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria.; Division of Cell and Developmental Biology, Medical University of Vienna, Vienna, Austria., Linhartová I; Institute of Microbiology of the Czech Academy of Sciences, Laboratory of Molecular Biology of Bacterial Pathogens, Prague, Czech Republic., Dienstbier A; Institute of Microbiology of the Czech Academy of Sciences, Laboratory of Post-transcriptional Control of Gene Expression, Prague, Czech Republic., Kumar D; Institute of Microbiology of the Czech Academy of Sciences, Laboratory of Post-transcriptional Control of Gene Expression, Prague, Czech Republic., Držmíšek J; Institute of Microbiology of the Czech Academy of Sciences, Laboratory of Post-transcriptional Control of Gene Expression, Prague, Czech Republic., Hofacker I; Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria.; Faculty of Computer Science, Research Group Bioinformatics and Computational Biology, University of Vienna, Vienna, Austria., Rodriguez ME; Facultad de Ciencias Exactas, Universidad Nacional de La Plata, CINDEFI (UNLP CONICET La Plata), La Plata, Argentina., Večerek B; Institute of Microbiology of the Czech Academy of Sciences, Laboratory of Post-transcriptional Control of Gene Expression, Prague, Czech Republic.

Publikováno v: RNA biology [RNA Biol] 2020 May; Vol. 17 (5), pp. 731-742. Date of Electronic Publication: 2020 Feb 19.

Comparative Integrated Omics Analysis of the Hfq Regulon in Bordetella pertussis .

Autor: Dienstbier A; Institute of Microbiology v.v.i., Laboratory of post-transcriptional control of gene expression, 14220 Prague, Czech Republic. ana.sencilo@biomed.cas.cz., Amman F; University of Vienna, Institute for Theoretical Chemistry, Währinger Straße 17, A-1090 Vienna, Austria. fabian@tbi.univie.ac.at.; Medical University of Vienna, Division of Cell and Developmental Biology, Schwarzspanierstraße 17, A-1090 Vienna, Austria. fabian@tbi.univie.ac.at., Štipl D; Institute of Microbiology v.v.i., Laboratory of post-transcriptional control of gene expression, 14220 Prague, Czech Republic. daniel.stipl@biomed.cas.cz., Petráčková D; Institute of Microbiology v.v.i., Laboratory of post-transcriptional control of gene expression, 14220 Prague, Czech Republic. petrack@biomed.cas.cz., Večerek B; Institute of Microbiology v.v.i., Laboratory of post-transcriptional control of gene expression, 14220 Prague, Czech Republic. vecerek@biomed.cas.cz.

Publikováno v: International journal of molecular sciences [Int J Mol Sci] 2019 Jun 24; Vol. 20 (12). Date of Electronic Publication: 2019 Jun 24.

Allostery, Recognition of Nascent Peptidoglycan, and Cross-linking of the Cell Wall by the Essential Penicillin-Binding Protein 2x of Streptococcus pneumoniae.

Autor: Bernardo-García N; Department of Crystallography and Structural Biology , Institute of Physical Chemistry 'Rocasolano,' CSIC , 28006 Madrid , Spain., Mahasenan KV; Department of Chemistry and Biochemistry , University of Notre Dame , Notre Dame , Indiana 46556 , United States., Batuecas MT; Department of Crystallography and Structural Biology , Institute of Physical Chemistry 'Rocasolano,' CSIC , 28006 Madrid , Spain., Lee M; Department of Chemistry and Biochemistry , University of Notre Dame , Notre Dame , Indiana 46556 , United States., Hesek D; Department of Chemistry and Biochemistry , University of Notre Dame , Notre Dame , Indiana 46556 , United States., Petráčková D; Institute of Microbiology, v.v.i , Czech Academy of Sciences , Prague 4 , 142 20 , Czech Republic., Doubravová L; Institute of Microbiology, v.v.i , Czech Academy of Sciences , Prague 4 , 142 20 , Czech Republic., Branny P; Institute of Microbiology, v.v.i , Czech Academy of Sciences , Prague 4 , 142 20 , Czech Republic., Mobashery S; Department of Chemistry and Biochemistry , University of Notre Dame , Notre Dame , Indiana 46556 , United States., Hermoso JA; Department of Crystallography and Structural Biology , Institute of Physical Chemistry 'Rocasolano,' CSIC , 28006 Madrid , Spain.

Publikováno v: ACS chemical biology [ACS Chem Biol] 2018 Mar 16; Vol. 13 (3), pp. 694-702. Date of Electronic Publication: 2018 Jan 30.