Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Petersen, BK"'
Publikováno v:
Hunt, C. Anthony; Petersen, BK; Ropella, GEP; & Hunt, CA. (2016). Virtual Experiments Enable Exploring and Challenging Explanatory Mechanisms of Immune-Mediated P450 Down-Regulation. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/2gb0z030
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::36915e32fbb7619184e18ea311540cc8
http://www.escholarship.org/uc/item/2gb0z030
http://www.escholarship.org/uc/item/2gb0z030
Toward modular biological models: Defining analog modules based on referent physiological mechanisms
Publikováno v:
Hunt, C. Anthony; Petersen, BK; Ropella, GEP; & Hunt, CA. (2014). Toward modular biological models: Defining analog modules based on referent physiological mechanisms. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/8v12c990
© 2014 Petersen et al.; licensee BioMed Central Ltd.Background: Currently, most biomedical models exist in isolation. It is often difficult to reuse or integrate models or their components, in part because they are not modular. Modular components al
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::c95223bc604c9b97e4b2154c2a659ec7
http://www.escholarship.org/uc/item/8v12c990
http://www.escholarship.org/uc/item/8v12c990
Akademický článek
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Akademický článek
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Autor:
Desautels TA; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Arrildt KT; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Zemla AT; Global Security Computing Applications Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Lau EY; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Zhu F; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Ricci D; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Cronin S; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA., Zost SJ; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA., Binshtein E; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA., Scheaffer SM; Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Dadonaite B; Basic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Center, Seattle, WA, USA., Petersen BK; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Engdahl TB; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA., Chen E; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA., Handal LS; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA., Hall L; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA., Goforth JW; Global Security Computing Applications Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Vashchenko D; Applications Simulations and Quality Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Nguyen S; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA, USA.; Google, Alphabet Inc., Mountain View, CA, USA., Weilhammer DR; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Lo JK; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Rubinfeld B; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Saada EA; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Weisenberger T; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Lee TH; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Whitener B; Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.; Vir Biotechnology, San Francisco, CA, USA., Case JB; Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Ladd A; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Silva MS; Global Security Computing Applications Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Haluska RM; Applications Simulations and Quality Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Grzesiak EA; Global Security Computing Applications Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Earnhart CG; Joint Program Executive Office for Chemical, Biological, Radiological, and Nuclear Defense, US Department of Defense, Frederick, MD, USA., Hopkins S; Joint Rsearch and Development Inc., Stafford, VA, USA., Bates TW; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Thackray LB; Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Segelke BW; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, USA., Lillo AM; Los Alamos National Laboratory, Bioscience Division, Los Alamos, NM, USA., Sundaram S; Center for Bioengineering, Lawrence Livermore National Laboratory, Livermore, CA, USA., Bloom JD; Basic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Center, Seattle, WA, USA.; Howard Hughes Medical Institute, Seattle, WA, USA., Diamond MS; Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.; Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA.; Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA., Crowe JE Jr; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Pediatrics, Vanderbilt University Medical Center, Nashville, TN, USA., Carnahan RH; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Pediatrics, Vanderbilt University Medical Center, Nashville, TN, USA., Faissol DM; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA, USA. faissol1@llnl.gov.
Publikováno v:
Nature [Nature] 2024 May; Vol. 629 (8013), pp. 878-885. Date of Electronic Publication: 2024 May 08.
Computationally restoring the potency of a clinical antibody against SARS-CoV-2 Omicron subvariants.
Autor:
Desautels TA; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Arrildt KT; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Zemla AT; Global Security Computing Applications Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Lau EY; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Zhu F; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Ricci D; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Cronin S; Vanderbilt Vaccine Center, Nashville, TN 37232, USA., Zost SJ; Vanderbilt Vaccine Center, Nashville, TN 37232, USA., Binshtein E; Vanderbilt Vaccine Center, Nashville, TN 37232, USA., Scheaffer SM; Department of Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA., Dadonaite B; Basic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA., Petersen BK; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Engdahl TB; Vanderbilt Vaccine Center, Nashville, TN 37232, USA., Chen E; Vanderbilt Vaccine Center, Nashville, TN 37232, USA., Handal LS; Vanderbilt Vaccine Center, Nashville, TN 37232, USA., Hall L; Vanderbilt Vaccine Center, Nashville, TN 37232, USA., Goforth JW; Global Security Computing Applications Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Vashchenko D; Applications Simulations and Quality Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Nguyen S; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Weilhammer DR; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Lo JK; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Rubinfeld B; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Saada EA; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Weisenberger T; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Lee TH; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Whitener B; Department of Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA., Case JB; Department of Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA., Ladd A; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Silva MS; Global Security Computing Applications Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Haluska RM; Applications Simulations and Quality Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Grzesiak EA; Global Security Computing Applications Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Earnhart CG; Joint Program Executive Office for Chemical, Biological, Radiological, and Nuclear Defense, US, Department of Defense, Frederick, MD 21703, USA., Hopkins S; Joint Research & Development, Inc., Stafford, VA 22556, USA., Bates TW; Global Security Directorate, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Thackray LB; Department of Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA., Segelke BW; Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Lillo AM; Los Alamos National Laboratory, Bioscience Division, Los Alamos, NM 87545, USA., Sundaram S; Center for Bioengineering, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA., Bloom J; Basic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.; Howard Hughes Medical Institute, Seattle, WA 98195, USA., Diamond MS; Department of Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA.; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO 63110, USA.; Department of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA., Crowe JE Jr; Vanderbilt Vaccine Center, Nashville, TN 37232, USA.; Department of Pediatrics, Vanderbilt University Medical Center, Nashville, TN 37232, USA., Carnahan RH; Vanderbilt Vaccine Center, Nashville, TN 37232, USA.; Department of Pediatrics, Vanderbilt University Medical Center, Nashville, TN 37232, USA., Faissol DM; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2023 Apr 24. Date of Electronic Publication: 2023 Apr 24.
Autor:
Faris JG; Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, CO, United States., Orbidan D; Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, CO, United States., Wells C; Department of Computer Science, Rice University, TX, Houston, United States., Petersen BK; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA, United States., Sprenger KG; Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, CO, United States.
Publikováno v:
Frontiers in immunology [Front Immunol] 2022 Nov 03; Vol. 13, pp. 1029167. Date of Electronic Publication: 2022 Nov 03 (Print Publication: 2022).
Autor:
Petersen BK; 1 Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, California., Yang J; 1 Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, California., Grathwohl WS; 1 Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, California., Cockrell C; 2 Department of Surgery, University of Vermont, Burlington, Vermont., Santiago C; 1 Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, California., An G; 2 Department of Surgery, University of Vermont, Burlington, Vermont., Faissol DM; 1 Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, California.
Publikováno v:
Journal of computational biology : a journal of computational molecular cell biology [J Comput Biol] 2019 Jun; Vol. 26 (6), pp. 597-604. Date of Electronic Publication: 2019 Jan 25.
Autor:
Mayhew MB; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA. Electronic address: mmayhew@inflammatix.com., Petersen BK; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA. Electronic address: petersen33@llnl.gov., Sales AP; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA. Electronic address: apsales@llnl.gov., Greene JD; Division of Research, Kaiser Permanente Northern California, Oakland, CA 94611, USA. Electronic address: john.d.greene@kp.org., Liu VX; Division of Research, Kaiser Permanente Northern California, Oakland, CA 94611, USA. Electronic address: vincent.x.liu@kp.org., Wasson TS; Computational Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA. Electronic address: twasson@gmail.com.
Publikováno v:
Journal of biomedical informatics [J Biomed Inform] 2018 Feb; Vol. 78, pp. 33-42. Date of Electronic Publication: 2017 Dec 02.
Autor:
Smith AK; Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA, United States of America., Petersen BK; UCSF/UCB Joint Graduate Group in Bioengineering, University of California, Berkeley, Berkeley, CA, United States of America., Ropella GE; Tempus Dictum, Inc., Milwaukie, OR, United States of America., Kennedy RC; Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA, United States of America., Kaplowitz N; Division of Gastrointestinal and Liver Diseases, Department of Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA, United States of America., Ookhtens M; Division of Gastrointestinal and Liver Diseases, Department of Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA, United States of America., Hunt CA; Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA, United States of America.
Publikováno v:
PLoS computational biology [PLoS Comput Biol] 2016 Dec 16; Vol. 12 (12), pp. e1005253. Date of Electronic Publication: 2016 Dec 16 (Print Publication: 2016).