Zobrazeno 1 - 10
of 72
pro vyhledávání: '"Peter J. A. Cock"'
Publikováno v:
PeerJ, Vol 11, p e15648 (2023)
THAPBI PICT is an open source software pipeline for metabarcoding analysis of Illumina paired-end reads, including cases of multiplexing where more than one amplicon is amplified per DNA sample. Initially a Phytophthora ITS1 Classification Tool (PICT
Externí odkaz:
https://doaj.org/article/8785f97214b64a08b5264d71a8827c00
Autor:
Kadiatou Schiffer-Forsyth, Debra Frederickson Matika, Pete E. Hedley, Peter J. A. Cock, Sarah Green
Publikováno v:
Horticulturae, Vol 9, Iss 6, p 616 (2023)
Phytophthora is a genus of destructive plant pathogens. Certain species are damaging to native ecosystems, forestry, and the horticultural sector, and there is evidence of their dissemination in plant imports. Horticultural nurseries are central node
Externí odkaz:
https://doaj.org/article/65ffaaa48aa3421c94ebf55e36e4ea0f
Autor:
Federico La Spada, Peter J. A. Cock, Eva Randall, Antonella Pane, David E. L. Cooke, Santa Olga Cacciola
Publikováno v:
Journal of Fungi, Vol 8, Iss 4, p 330 (2022)
Isolation techniques supplemented by sequencing of DNA from axenic cultures have provided a robust methodology for the study of Phytophthora communities in agricultural and natural ecosystems. Recently, metabarcoding approaches have emerged as new pa
Externí odkaz:
https://doaj.org/article/1f3d8af130534d37af16aac9d050509a
Autor:
Jamie N. Orr, Roy Neilson, Thomas E. Freitag, David M. Roberts, Keith G. Davies, Vivian C. Blok, Peter J. A. Cock
Publikováno v:
Frontiers in Plant Science, Vol 10 (2020)
Pasteuria spp. are endospore forming bacteria which act as natural antagonists to many of the most economically significant plant parasitic nematodes (PPNs). Highly species-specific nematode suppression may be observed in soils containing a sufficien
Externí odkaz:
https://doaj.org/article/0355ffc812a5491683549ce7401d9832
Autor:
Dongping Wang, Mingsheng Qi, Bernarda Calla, Schuyler S. Korban, Steven J. Clough, Peter J. A. Cock, George W. Sundin, Ian Toth, Youfu Zhao
Publikováno v:
Molecular Plant-Microbe Interactions, Vol 25, Iss 1, Pp 6-17 (2012)
The exopolysaccharide amylovoran is one of the major pathogenicity factors in Erwinia amylovora, the causal agent of fire blight of apples and pears. We have previously demonstrated that the RcsBCD phosphorelay system is essential for virulence by co
Externí odkaz:
https://doaj.org/article/06f031d0f9674a01b465f9792b51ba94
Autor:
Pierre-Yves Véronneau, Miroslaw Sobczak, Slawomir Janakowski, John T. Jones, Joanne Tze-Yin Lim, Peter J. A. Cock, Kyriakos Varypatakis, Miles R. Armstrong, Benjamin Mimee, Ingo Hein, Peter Thorpe, Vivian C. Blok
Publikováno v:
GENES
Genes, Vol 11, Iss 1429, p 1429 (2020)
Genes
Volume 11
Issue 12
Genes, Vol 11, Iss 1429, p 1429 (2020)
Genes
Volume 11
Issue 12
This work was funded through an AHDB PhD award, the USDA GLOBAL Project and by the Rural and Environmental Science and Analytical Services division of the Scottish Government. Bioinformatics and computational analyses for the generation of the new G.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f93896ddc4ab9764be8823c8574df2e7
https://hdl.handle.net/10023/21108
https://hdl.handle.net/10023/21108
Autor:
Nomi L. Harris, Yo Yehudi, Jessica Maia, Karsten Hokamp, Christopher J. Fields, Morgan Taschuk, Peter J. A. Cock, Monica Munoz-Torres
Publikováno v:
F1000Research
Launched in 2000 and held every year since, the Bioinformatics Open Source Conference (BOSC) is a volunteer-run meeting coordinated by the Open Bioinformatics Foundation (OBF) that covers open source software development and open science in bioinform
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::37e820f87337ed9e7b3d539c6ef446da
https://escholarship.org/uc/item/6pd4b1rf
https://escholarship.org/uc/item/6pd4b1rf
Autor:
Heather L. Wiencko, Nomi L. Harris, Peter J. A. Cock, Monica Munoz-Torres, Yo Yehudi, Karsten Hokamp, Bastian Greshake Tzovaras, Alexander Peltzer, Bastian Rieck, Christopher J. Fields, Michael L. Heuer
Publikováno v:
F1000Research
The Bioinformatics Open Source Conference is a volunteer-organized meeting that covers open source software development and open science in bioinformatics. Launched in 2000, BOSC has been held every year since. BOSC 2019, the 20th annual BOSC, took p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34d1df9a0947049d945399608b37db66
http://europepmc.org/articles/PMC6971845
http://europepmc.org/articles/PMC6971845
Autor:
Karsten Hokamp, Malvika Sharan, Jason Williams, Christopher J. Fields, Nomi L. Harris, Peter J. A. Cock, Monica Munoz-Torres, Jessica Maia
Publikováno v:
F1000Research
The 22nd annual Bioinformatics Open Source Conference (BOSC 2021, open-bio.org/events/bosc-2021/) was held online as a track of the 2021 Intelligent Systems for Molecular Biology / European Conference on Computational Biology (ISMB/ECCB) conference.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3c850f2772cbc6dd621f2d91a38cd69b
https://doi.org/10.12688/f1000research.74074.1
https://doi.org/10.12688/f1000research.74074.1
Autor:
Susan Jones, Wendy J. McGavin, Peter J. A. Cock, Lesley Torrance, Stuart A. MacFarlane, Amanda Baizan-Edge
This work was supported by the Biotechnology and Biological Sciences Research Council [BB/N023293/1]. The work of L.T., S.J., S.M. and P.C.was additionally supported by the Scottish Government’s Rural and Environment Science and Analytical Services
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ee7a2771cc3d1505d9d8215e0625f2a1
https://hdl.handle.net/10023/17261
https://hdl.handle.net/10023/17261