High resolution ancient sedimentary DNA shows that alpine plant diversity is associated with human land use and climate change

Autor: Sandra Garcés-Pastor, Eric Coissac, Sébastien Lavergne, Christoph Schwörer, Jean-Paul Theurillat, Peter D. Heintzman, Owen S. Wangensteen, Willy Tinner, Fabian Rey, Martina Heer, Astrid Rutzer, Kevin Walsh, Youri Lammers, Antony G. Brown, Tomasz Goslar, Dilli P. Rijal, Dirk N. Karger, Loïc Pellissier, The PhyloAlps Consortium, Oliver Heiri, Inger Greve Alsos

Publikováno v: Nature Communications, Vol 13, Iss 1, Pp 1-16 (2022)

Here, the authors use sedimentary DNA, pollen, fungal spores, chironomids, and microcharcoal from an alpine lake core to reconstruct vegetation across 12,000 years. They find that vegetation responded to climate in the early Holocene, followed by a s

Externí odkaz: https://doaj.org/article/daec51599bd3458dad919c82af64a161

Environmental palaeogenomic reconstruction of an Ice Age algal population

Autor: Youri Lammers, Peter D. Heintzman, Inger Greve Alsos

Publikováno v: Communications Biology, Vol 4, Iss 1, Pp 1-11 (2021)

Lammers et al. use sedimentary ancient DNA to reconstruct palaeogenomes of Nannochloropsis. This study demonstrates the value of sedaDNA for palaeogenomic reconstructions and population genomic analysis.

Externí odkaz: https://doaj.org/article/cd888f5df55c4443bf884f2c30a01063

Sedimentary Ancient DNA Reveals Local Vegetation Changes Driven by Glacial Activity and Climate

Autor: Lucas D. Elliott, Dilli P. Rijal, Antony G. Brown, Jostein Bakke, Lasse Topstad, Peter D. Heintzman, Inger G. Alsos

Publikováno v: Quaternary, Vol 6, Iss 1, p 7 (2023)

Disentangling the effects of glaciers and climate on vegetation is complicated by the confounding role that climate plays in both systems. We reconstructed changes in vegetation occurring over the Holocene at Jøkelvatnet, a lake located directly dow

Externí odkaz: https://doaj.org/article/6a88f56dbba94365a6c3186a06de4240

How genomics can help biodiversity conservation

Autor: Kathrin Theissinger, Carlos Fernandes, Giulio Formenti, Iliana Bista, Paul R. Berg, Christoph Bleidorn, Aureliano Bombarely, Angelica Crottini, Guido R. Gallo, José A. Godoy, Sissel Jentoft, Joanna Malukiewicz, Alice Mouton, Rebekah A. Oomen, Sadye Paez, Per J. Palsbøll, Christophe Pampoulie, María J. Ruiz-López, Simona Secomandi, Hannes Svardal, Constantina Theofanopoulou, Jan de Vries, Ann-Marie Waldvogel, Guojie Zhang, Erich D. Jarvis, Miklós Bálint, Claudio Ciofi, Robert M. Waterhouse, Camila J. Mazzoni, Jacob Höglund, Sargis A. Aghayan, Tyler S. Alioto, Isabel Almudi, Nadir Alvarez, Paulo C. Alves, Isabel R. Amorim do Rosario, Agostinho Antunes, Paula Arribas, Petr Baldrian, Giorgio Bertorelle, Astrid Böhne, Andrea Bonisoli-Alquati, Ljudevit L. Boštjančić, Bastien Boussau, Catherine M. Breton, Elena Buzan, Paula F. Campos, Carlos Carreras, L. FIlipe C. Castro, Luis J. Chueca, Fedor Čiampor, Elena Conti, Robert Cook-Deegan, Daniel Croll, Mónica V. Cunha, Frédéric Delsuc, Alice B. Dennis, Dimitar Dimitrov, Rui Faria, Adrien Favre, Olivier D. Fedrigo, Rosa Fernández, Gentile Francesco Ficetola, Jean-François Flot, Toni Gabaldón, Dolores R. Agius, Alice M. Giani, M. Thomas P. Gilbert, Tine Grebenc, Katerina Guschanski, Romain Guyot, Bernhard Hausdorf, Oliver Hawlitschek, Peter D. Heintzman, Berthold Heinze, Michael Hiller, Martin Husemann, Alessio Iannucci, Iker Irisarri, Kjetill S. Jakobsen, Peter Klinga, Agnieszka Kloch, Claudius F. Kratochwil, Henrik Kusche, Kara K.S. Layton, Jennifer A. Leonard, Emmanuelle Lerat, Gianni Liti, Tereza Manousaki, Tomas Marques-Bonet, Pável Matos-Maraví, Michael Matschiner, Florian Maumus, Ann M. Mc Cartney, Shai Meiri, José Melo-Ferreira, Ximo Mengual, Michael T. Monaghan, Matteo Montagna, Robert W. Mysłajek, Marco T. Neiber, Violaine Nicolas, Marta Novo, Petar Ozretić, Ferran Palero, Lucian Pârvulescu, Marta Pascual, Octávio S. Paulo, Martina Pavlek, Cinta Pegueroles, Loïc Pellissier, Graziano Pesole, Craig R. Primmer, Ana Riesgo, Lukas Rüber, Diego Rubolini, Daniele Salvi, Ole Seehausen, Matthias Seidel, Bruno Studer, Spyros Theodoridis, Marco Thines, Lara Urban, Anti Vasemägi, Adriana Vella, Noel Vella, Sonja C. Vernes, Cristiano Vernesi, David R. Vieites, Christopher W. Wheat, Gert Wörheide, Yannick Wurm, Gabrielle Zammit

Publikováno v: The European Reference Genome Atlas Consortium 2023, ' How genomics can help biodiversity conservation ', Trends in Genetics, vol. 39, no. 7 . https://doi.org/10.1016/j.tig.2023.01.005
Trends in genetics
Trends in genetics, str. , Vol. , iss. , 2023
COBISS-ID: 520937241
Theissinger, Kathrin; Fernandes, Carlos; Formenti, Giulio; Bista, Iliana; Berg, Paul R.; Bleidorn, Christoph; Bombarely, Aureliano; Crottini, Angelica; Gallo, Guido R.; Godoy, José A.; Jentoft, Sissel; Malukiewicz, Joanna; Mouton, Alice; Oomen, Rebekah A.; Paez, Sadye; Palsbøll, Per J.; Pampoulie, Christophe; Ruiz-López, María J.; Secomandi, Simona; Svardal, Hannes; ... (2023). How genomics can help biodiversity conservation. Trends in genetics, 39(7), pp. 545-559. Elsevier Current Trends 10.1016/j.tig.2023.01.005
European Reference Genome Atlas (ERGA) Consortium 2023, ' How genomics can help biodiversity conservation ', Trends in Genetics . https://doi.org/10.1016/j.tig.2023.01.005
Trends in Genetics, 39 (7)
Trends in Genetics
Trends in genetics, 2023.

The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4d017d3941ad247384ff4473b9978be5
https://doi.org/10.5167/uzh-231893

Environmental DNA of aquatic macrophytes: the potential for reconstructing past and present vegetation and environments

Autor: Aloïs Revéret, Dilli P. Rijal, Peter D. Heintzman, Antony G. Brown, Kathleen R. Stoof-Leichsenring, Inger G. Alsos

Environmental DNA is increasingly being used to reconstruct past and present biodiversity including from freshwater ecosystems. Here, we first review and compare studies that use metagenomics, targeted capture, and various barcoding and metabarcoding

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::dc15f9eebfdf99754492d510c7ce582c
https://doi.org/10.1101/2023.03.27.533457