Zobrazeno 1 - 10
of 836
pro vyhledávání: '"Peter, F Stadler"'
Autor:
Anderson P. Avila Santos, Breno L. S. de Almeida, Robson P. Bonidia, Peter F. Stadler, Polonca Stefanic, Ines Mandic-Mulec, Ulisses Rocha, Danilo S. Sanches, André C.P.L.F. de Carvalho
Publikováno v:
RNA Biology, Vol 21, Iss 1, Pp 1-12 (2024)
ABSTRACTThe accurate classification of non-coding RNA (ncRNA) sequences is pivotal for advanced non-coding genome annotation and analysis, a fundamental aspect of genomics that facilitates understanding of ncRNA functions and regulatory mechanisms in
Externí odkaz:
https://doaj.org/article/2725291de7df4245ba84e26d93cbc716
Autor:
Tieu-Long Phan, Klaus Weinbauer, Thomas Gärtner, Daniel Merkle, Jakob L. Andersen, Rolf Fagerberg, Peter F. Stadler
Publikováno v:
Journal of Cheminformatics, Vol 16, Iss 1, Pp 1-18 (2024)
Abstract Purpose Reaction databases are a key resource for a wide variety of applications in computational chemistry and biochemistry, including Computer-aided Synthesis Planning (CASP) and the large-scale analysis of metabolic networks. The full pot
Externí odkaz:
https://doaj.org/article/b648281f42a7453a94f4907c86e00bba
Autor:
Sandra Triebel, Kevin Lamkiewicz, Nancy Ontiveros, Blake Sweeney, Peter F. Stadler, Anton I. Petrov, Michael Niepmann, Manja Marz
Publikováno v:
Scientific Reports, Vol 14, Iss 1, Pp 1-12 (2024)
Abstract Hepatitis C virus (HCV) is a plus-stranded RNA virus that often chronically infects liver hepatocytes and causes liver cirrhosis and cancer. These viruses replicate their genomes employing error-prone replicases. Thereby, they routinely gene
Externí odkaz:
https://doaj.org/article/60cac77d8c7c49d1b81ee5d4959f6b3e
Publikováno v:
Heliyon, Vol 10, Iss 14, Pp e34473- (2024)
The Neuropeptide Y/RFamide-like receptors belong to the Rhodopsin-like G protein-coupled receptors G protein-coupled receptors (GPCRs) and are involved in functions such as locomotion, feeding and reproduction. With 41 described receptors they form t
Externí odkaz:
https://doaj.org/article/8a07ceaa5f5e4e7fa71c8919dd9cb4f8
Autor:
Marcos E. González Laffitte, Klaus Weinbauer, Tieu-Long Phan, Nora Beier, Nico Domschke, Christoph Flamm, Thomas Gatter, Daniel Merkle, Peter F. Stadler
Publikováno v:
Symmetry, Vol 16, Iss 9, p 1217 (2024)
Atom-to-atom maps (AAMs) are bijections that establish the correspondence of reactant and product atoms across chemical reactions. They capture crucial features of the reaction mechanism and thus play a central role in modeling chemistry at the level
Externí odkaz:
https://doaj.org/article/122e7c93edf14290b26fb91a76e64c06
Autor:
David H. Wolpert, Michael H. Price, Stefani A. Crabtree, Timothy A. Kohler, Jürgen Jost, James Evans, Peter F. Stadler, Hajime Shimao, Manfred D. Laubichler
Publikováno v:
Journal of Computer Applications in Archaeology, Vol 7, Iss 1, Pp 244–245-244–245 (2024)
This article details a correction to: Wolpert, D.H., Price, M.H., Crabtree, S.A., Kohler, T.A., Jost, J., Evans, J., Stadler, P.F., Shimao, H. and Laubichler, M.D. (2024) ‘The Past as a Stochastic Process’, Journal of Computer Applications in Arc
Externí odkaz:
https://doaj.org/article/6b96ff60cdb440efafc71dedde0f4eda
Autor:
David Schaller, Tom Hartmann, Manuel Lafond, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
Publikováno v:
Algorithms for Molecular Biology, Vol 18, Iss 1, Pp 1-43 (2023)
Abstract Background Evolutionary scenarios describing the evolution of a family of genes within a collection of species comprise the mapping of the vertices of a gene tree T to vertices and edges of a species tree S. The relative timing of the last c
Externí odkaz:
https://doaj.org/article/fc59eef7fb02402f8207917ae7fe7ca0
Autor:
Anderson Paulo Avila Santos, Muhammad Kabiru Nata’ala, Jonas Coelho Kasmanas, Alexander Bartholomäus, Tina Keller-Costa, Stephanie D. Jurburg, Tamara Tal, Amélia Camarinha-Silva, João Pedro Saraiva, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches, Ulisses Rocha
Publikováno v:
Animal Microbiome, Vol 5, Iss 1, Pp 1-13 (2023)
Abstract Background Metagenomic data can shed light on animal-microbiome relationships and the functional potential of these communities. Over the past years, the generation of metagenomics data has increased exponentially, and so has the availabilit
Externí odkaz:
https://doaj.org/article/0db8c2fed14746e89e5023c1311b893d
Autor:
Jürgen Jost, Roberto Lalli, Manfred D. Laubichler, Eckehard Olbrich, Jürgen Renn, Guillermo Restrepo, Peter F. Stadler, Dirk Wintergrün
Publikováno v:
Journal of Social Computing, Vol 4, Iss 3, Pp 232-242 (2023)
We propose a program for a computational analysis, based on large scale datasets, of deep conceptual and formal structures, representing the mechanisms of historical transformations in different domains ranging from biological to social, cultural, an
Externí odkaz:
https://doaj.org/article/cb93cf7e7fc849f7a440b3f6bf4bc1d6
Publikováno v:
Algorithms for Molecular Biology, Vol 18, Iss 1, Pp 1-13 (2023)
Abstract Background RNA features a highly negatively charged phosphate backbone that attracts a cloud of counter-ions that reduce the electrostatic repulsion in a concentration dependent manner. Ion concentrations thus have a large influence on foldi
Externí odkaz:
https://doaj.org/article/09354f9609264926bf54b06c6569c332