Zobrazeno 1 - 10
of 39
pro vyhledávání: '"Penelope Garmiri"'
Autor:
Elena Speretta, Marc Feuermann, Paul Denny, Yvonne Lussi, Antonia Lock, Alexandr Ignatchenko, Philippe Le Mercier, Dushyanth Jyothi, Alexandre Renaux, Ivo Pedruzzi, Emmanuel Boutet, Emanuele Alpi, Claire O'Donovan, Edward Turner, Sandra Orchard, Patrick Masson, Alex Bateman, Peter McGarvey, Emma Hatton-Ellis, Michele Magrane, Alan Bridge, Hema Bye-A-Jee, Ramona Britto, Giuseppe Insana, Shriya Raj, Maria-Jesus Martin, Catherine Rivoire, Penelope Garmiri, Emily Bowler-Barnett, Vishal Joshi, Kate Warner
Publikováno v:
Bioinformatics
Motivation The number of protein records in the UniProt Knowledgebase (UniProtKB: https://www.uniprot.org) continues to grow rapidly as a result of genome sequencing and the prediction of protein-coding genes. Providing functional annotation for thes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45bc39fe611c80c83f7c420b2257277e
http://europepmc.org/articles/PMC7750954
http://europepmc.org/articles/PMC7750954
Autor:
Milagros Rodríguez-López, Barbara Kramarz, Marios Makris, Katherine E. Thurlow, Sandra de Miranda Pinheiro, Shirin C C Saverimuttu, Helen Attrill, Penelope Garmiri, Sandra Orchard, Ruth C. Lovering
Publikováno v:
Database: The Journal of Biological Databases and Curation
The role of the blood–brain barrier (BBB) in Alzheimer’s and other neurodegenerative diseases is still the subject of many studies. However, those studies using high-throughput methods have been compromised by the lack of Gene Ontology (GO) annot
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5e2dac34ee3ca27d13e28e4e3aa481ac
https://doi.org/10.1093/database/baab067
https://doi.org/10.1093/database/baab067
Autor:
Fábio Madeira, Emmanuel Boutet, Ursula Hinz, Teresa Batista Neto, Parit Bansal, Manuela Pruess, Kristian B. Axelsen, Arnaud Kerhornou, Cecilia N. Arighi, Lai-Su L. Yeh, Shadab Ahmad, John S. Garavelli, Cathy H. Wu, Florence Jungo, Alan Bridge, Leonardo Gonzales, Sandra Orchard, Patrick Masson, Douglas Teodoro, Maria Jesus Martin, Anne Estreicher, Kamal Chikh Echioukh, Hongzhan Huang, Patrick Ruch, Christian J. A. Sigrist, C. R. Vinayaka, Yvonne Lussi, Anne Morgat, Yongxing Chen, Austra Cukura, Emanuele Alpi, Ramona Britto, Alexandr Ignatchenko, Sylvain Poux, Rizwan Ishtiaq, Lionel Breuza, Jun Fan, Edouard de Castro, Petteri Jokinen, Nicole Redaschi, Darren A. Natale, Daniel Rice, Giuseppe Insana, George Georghiou, Nevila Hyka-Nouspikel, Karen E. Ross, Katie Moulang, Vicente Lara, Arnaud Gos, Michael Tognolli, Alok Mishra, Ivo Pedruzzi, Nidhi Tyagi, Leyla Jael Garcia Castro, Edward Turner, Cristina Casals-Casas, Tunca Doğan, Nadine Gruaz-Gumowski, Chantal Hulo, Maria Livia Famiglietti, Andrew Nightingale, Paul Denny, Lucila Aimo, Rossana Zaru, Vishal Joshi, Alistair MacDougall, Andre Stutz, Penelope Garmiri, Carla Susana Oliveira, Hermann Zellner, Marie-Claude Blatter, Emily H Bowler-Barnett, Philippe Le Mercier, Abdulrahman Hussein, Catherine Rivoire, Tony Sawford, Milagros Rodriguez Lopez, Salvo Paesano, Vladimir Volynkin, Manuela Menchi, Hema Bye-A-Jee, Monica Pozzato, Kati Laiho, Delphine Baratin, Qinghua Wang, Leslie Arminski, Preethi Vasudev, Sangya Pundir, Jian Zhang, Emma Hatton-Ellis, Kate Warner, Lucille Pourcel, Elisabeth Gasteiger, Marc Feuermann, Thierry Lombardot, Jerven Bolleman, Mahdi Mahmoudy, Shyamala Sundaram, Alex Bateman, Xavier Watkins, Rahat Agivetova, Guoying Qi, Peter B. McGarvey, Xavier D. Martin, Chuming Chen, Jie Luo, Ray Coetzee, K Sonesson, Alan Wilter Sousa da Silva, ThankGod Ebenezer, Elena Speretta, Rodrigo Lopez, Elisabeth Coudert, Aurelien Luciani, Vivienne Baillie Gerritsen, Yuqi Wang, M Doche, Michele Magrane, Antonia Lock, Dolnide Dornevil, Sandrine Pilbout, Borisas Bursteinas, Andrea H. Auchincloss, Béatrice A. Cuche, Dushyanth Jyothi, Rabie Saidi, Joseph Sampson, Laure Verbregue, Sebastien Gehant, Guillaume Keller, Shriya Raj, Damien Lieberherr, Ghislaine Argoud-Puy
Publikováno v:
Nucleic acids symposium series, 49(D1):D480-D489
Nucleic Acids Research
Nucleic acids research, Vol. 49, No D1 (2021) pp. D480-D489
Nucleic Acids Research
Nucleic acids research, Vol. 49, No D1 (2021) pp. D480-D489
The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this article, we describe significant updates that we have made over
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cbc39a701c00fab2f8e9cd325fc3977e
https://repository.publisso.de/resource/frl:6425514
https://repository.publisso.de/resource/frl:6425514
Autor:
Elena Speretta, Marc Feuermann, Lionel Breuza, Yvonne Lussi, Alexandr Ignatchenko, George Georghiou, Christian J. A. SIGRIST, Dushyanth Jyothi, Ivo Pedruzzi, Florence Jungo, Emmanuel Boutet, Emanuele Alpi, Rossana Zaru, Edward Turner, Tunca Dogan, Sandra Orchard, Patrick Masson, Cathy Wu, Alex Bateman, Peter McGarvey, Emma Hatton-Ellis, Nicole Redaschi, Michele Magrane, Alan Bridge, Hema Bye-A-Jee, Ramona Britto, Giuseppe Insana, Leyla Jael Castro, Shriya Raj, Sylvain Poux, Maria-Jesus Martin, Penelope Garmiri, Emily Bowler-Barnett, Kate Warner
Publikováno v:
Scientific Data
Scientific Data, Vol 6, Iss 1, Pp 1-4 (2019)
Scientific Data, Vol 6, Iss 1, Pp 1-4 (2019)
UniProt continues to support the ongoing process of making scientific data FAIR. Here we contribute to this process with a FAIRness assessment of our UniProtKB dataset followed by a critical reflection on the challenges and future directions of the a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1b599cb5f4982ee2d02cbbf93aab6a4b
https://pubmed.ncbi.nlm.nih.gov/31541106
https://pubmed.ncbi.nlm.nih.gov/31541106
Autor:
Helen, Attrill, Pascale, Gaudet, Rachael P, Huntley, Ruth C, Lovering, Stacia R, Engel, Sylvain, Poux, Kimberly M, Van Auken, George, Georghiou, Marcus C, Chibucos, Tanya Z, Berardini, Valerie, Wood, Harold, Drabkin, Petra, Fey, Penelope, Garmiri, Midori A, Harris, Tony, Sawford, Leonore, Reiser, Rebecca, Tauber, Sabrina, Toro
Publikováno v:
Database: The Journal of Biological Databases and Curation
High-throughput studies constitute an essential and valued source of information for researchers. However, high-throughput experimental workflows are often complex, with multiple data sets that may contain large numbers of false positives. The repres
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::27d5d34095b12b19b1d324662e4aa589
https://pubmed.ncbi.nlm.nih.gov/30715275
https://pubmed.ncbi.nlm.nih.gov/30715275
Autor:
Borisas Bursteinas, L-S Yeh, Klemens Pichler, Guillaume Keller, C Casal-Casas, Gerritsen, A Da Silva, Prudence Mutowo, Xavier D. Martin, Peter B. McGarvey, Volynkin, J Lew, K Sonesson, M. C. Blatter, L Pureza, Rodrigo Lopez, Anne Estreicher, Alex Bateman, Ramona Britto, A-L Veuthey, Penelope Garmiri, Patrick Masson, Baris E. Suzek, Cathy H. Wu, Paul Gane, Maria Jesus Martin, Shyamala Sundaram, Yasmin Alam-Faruque, Ioannis Xenarios, Alan Bridge, WM Chan, Guoying Qi, L Famiglietti, Christian J. A. Sigrist, Nadine Gruaz-Gumowski, Chantal Hulo, Hermann Zellner, Matthew Corbett, Monica Pozzato, Thierry Lombardot, S Staehli, Jerven Bolleman, Sylvain Poux, Séverine Duvaud, Tony Sawford, Chuming Chen, Xavier Watkins, Yuqi Wang, Elisabeth Gasteiger, Kati Laiho, Qinghua Wang, M Bingley, Lydie Bougueleret, Kristian B. Axelsen, Yongxing Chen, Salvo Paesano, Andrew Nightingale, Nicole Redaschi, Emma Hatton-Ellis, John S. Garavelli, Delphine Baratin, Darren A. Natale, Gayatri Chavali, E de Castro, Leslie Arminski, Damien Lieberherr, Elena Cibrian-Uhalte, Catherine Rivoire, Bernd Roechert, Yerramalla, Hongzhan Huang, Alistair MacDougall, Edd Turner, Maria Victoria Schneider, Aleksandra Shypitsyna, Jie Zhang, Michele Magrane, Dolnide Dornevil, Lara, M Donnelly, F. Fazzini, Andrea H. Auchincloss, Emanuele Alpi, Benoit Bely, Brigitte Boeckmann, Rolf Apweiler, Rachael P. Huntley, Lionel Breuza, Sangya Pundir, Lorenzo Cerutti, Tunca Doğan, EB Casanova, P van Rensburg, Rabie Saidi, Jie Luo, Mickael Goujon, Laure Verbregue, Tony Wardell, W Liu, Andre Stutz, P Lemercier, Hamish McWilliam, Ivo Pedruzzi, P-A Binz, Sebastien Gehant, Béatrice A. Cuche, Carlos Bonilla, Duncan Legge, C. R. Vinayaka, Anne Morgat, Diego Poggioli, J Arganiska, Teresa Batista Neto, Emmanuel Boutet, Florence Jungo, Ursula Hinz, Parit Bansal, Sandra Orchard, Ricardo Antunes, Manuela Pruess, M Feuermann, S. Rosanoff, Claire O'Donovan, Cecilia N. Arighi, J. James, M Doche, Elisabeth Coudert, M De Giorgi, Reija Hieta, Sandrine Pilbout, Arnaud Gos, Michael Tognolli, Leyla Jael Garcia Castro, Lucila Aimo
Publikováno v:
Nucleic Acids Research
The mission of the Universal Protein Resource (UniProt) (http://www.uniprot.org) is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequences and functional annotation. It integrates, i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dacc18afba0dcb8db8d93542e3ba0bff
http://europepmc.org/articles/PMC3965022
http://europepmc.org/articles/PMC3965022
Publikováno v:
Journal of Medical Virology. 83:948-952
Iran is a low to medium endemic country for hepatitis B virus (HBV), depending on the region, where genotype D is dominant. Samples from 170 asymptomatic HBsAg-positive blood donors were quantified and the median viral load was 6.7 × 102 IU/ml with
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::355ed9a77fb0f775a02b71ad54002618
https://doi.org/10.1002/jmv.21772
https://doi.org/10.1002/jmv.21772
Autor:
Ewa Brojer, D. Doucet, Penelope Garmiri, Piotr Grabarczyk, G. Liszewski, J.-P. Allain, E. Sulkowska
Publikováno v:
Journal of Viral Hepatitis. 17:444-452
Summary. Hepatitis B virus (HBV) genotypes have distinct geographical distributions and influence severity of clinical outcome and response to antiviral therapies. HBV polymorphism in HBV surface antigen (HBsAg) positive first time blood donors from
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::539543a651d48894624d58194143d4c8
https://doi.org/10.1111/j.1365-2893.2009.01192.x
https://doi.org/10.1111/j.1365-2893.2009.01192.x
Publikováno v:
FEMS Microbiology Letters. 281:155-159
The ability to survive desiccation between hosts is often essential to the success of pathogenic bacteria. The bacterial outer membrane is both the cellular interface with hostile environments and the focus of much of the drying-induced damage. This
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8dc158430d971b5d5678a9681bf6baa1
https://doi.org/10.1111/j.1574-6968.2008.01093.x
https://doi.org/10.1111/j.1574-6968.2008.01093.x
Autor:
Lisa Matthews, Rex Chisholm, Philippa Talmud, Paul Denny, Lionel Breuza, Kim Rutherford, Antonia Lock, Nicholas Brown, Rachael Huntley, Tanya Berardini, Rebecca Foulger, Paul Kersey, Peter D'Eustachio, Ivo Pedruzzi, Valerie Wood, Diane Inglis, Paul Lloyd, Daniel Staines, Michael Tognolli, Nancy Campbell, Emmanuel Boutet, Alice Dashow, Mark McDowall, Claire O'Donovan, Deborah Siegele, Pascale Gaudet, Paul Thomas, Ruth Lovering, James Hu, Janos Demeter, Patrick Masson, Cathy Wu, Alex Bateman, Jurg Bahler, Emma Hatton-Ellis, Midori Harris, Michele Magrane, Anne Estreicher, Alan Bridge, Suzi Aleksander, Paola Roncaglia, Eva Huala, Robert Finn, Petra Fey, J. Michael Cherry, Susan Tweedie, David Osumi-Sutherland, Jane Lomax, Benoit Bely, Ramona Britto, Joanna Argasinska, Stacia Engel, Elena Cibrián Uhalte, Prudence Mutowo, Sylvain Poux, Maria-Jesus Martin, Catherine Rivoire, Elisabeth Coudert, Helen Parkinson, Stephen E Humphries, Penelope Garmiri, Amaia Sangrador, Paul Gane, Marcus Chibucos, Helen Attrill, Klemens Pichler, Cecilia Arighi, Maxim Scheremetjew
Publikováno v:
Nucleic Acids Research, Vol. 43, No Database issue (2015) pp. D1049-56
Nucleic Acids Research
Nucleic Acids Research
The Gene Ontology (GO; http://www.geneontology.org) is a community-based bioinformatics resource that supplies information about gene product function using ontologies to represent biological knowledge. Here we describe improvements and expansions to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4113dcc164be0602b564f2348da179d4
https://resolver.caltech.edu/CaltechAUTHORS:20150409-154316585
https://resolver.caltech.edu/CaltechAUTHORS:20150409-154316585