Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Pegah Tootoonchi Afshar"'
Autor:
Narges Bani Asadi, Wing Hung Wong, Pegah Tootoonchi Afshar, Eric E. Schadt, Sayed Mohammad Ebrahim Sahraeian, Michael Snyder, Kin Fai Au, Hugo Y. K. Lam, Hagen Tilgner, Marghoob Mohiyuddin, Mark Gerstein, Robert Sebra
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-15 (2017)
Nature Communications
Nature Communications
RNA-sequencing (RNA-seq) is an essential technique for transcriptome studies, hundreds of analysis tools have been developed since it was debuted. Although recent efforts have attempted to assess the latest available tools, they have not evaluated th
Autor:
Shinji Yamashita, Shing-Wa Wong, Ying Yan, She-Hwa Yen, Vinesh Gudla, Pegah Tootoonchi Afshar, Leonid G. Kazovsky
Publikováno v:
IET Optoelectronics. 5:133-143
Recently, broadband optical access networks were being deployed worldwide to deliver large bandwidth to end users. Currently, the operators have been mainly deploying time-division multiplexing (TDM) passive optical networks (PON) in their networks.
Autor:
Wing Hung Wong, Narges Bani Asadi, Mark Gerstein, Xi Chen, Marghoob Mohiyuddin, John C. Mu, Hugo Y. K. Lam, Pegah Tootoonchi Afshar, Jian Li
Publikováno v:
Scientific Reports
A high-confidence, comprehensive human variant set is critical in assessing accuracy of sequencing algorithms, which are crucial in precision medicine based on high-throughput sequencing. Although recent works have attempted to provide such a resourc
Autor:
Narges Bani Asadi, Marghoob Mohiyuddin, John C. Mu, Daniel C. Koboldt, Greg Gibeling, Aparna Chhibber, Yu Fan, Mark Gerstein, Li Tai Fang, Wing Hung Wong, Wenyi Wang, Pegah Tootoonchi Afshar, Sharon Y. Barr, Hugo Y. K. Lam
Publikováno v:
Genome Biology
SomaticSeq is an accurate somatic mutation detection pipeline implementing a stochastic boosting algorithm to produce highly accurate somatic mutation calls for both single nucleotide variants and small insertions and deletions. The workflow currentl
Autor:
Elizabeth Tseng, Jonas Korlach, Kin Fai Au, Jason L. Weirather, Jason G. Underwood, Linda S. Powers, Wing Hung Wong, Pegah Tootoonchi Afshar, Tyson A. Clark, Joseph Zabner
Publikováno v:
Nucleic Acids Research
We developed an innovative hybrid sequencing approach, IDP-fusion, to detect fusion genes, determine fusion sites and identify and quantify fusion isoforms. IDP-fusion is the first method to study gene fusion events by integrating Third Generation Se
Publikováno v:
Nucleic Acids Research
Third generation sequencing (TGS) are highly promising technologies but the long and noisy reads from TGS are difficult to align using existing algorithms. Here, we present COSINE, a conceptually new method designed specifically for aligning long rea
Autor:
Christoph Lange, Kun Wang, Mikhail Popov, Shing-Wa Wong, Vinesh Gudla, Dirk Breuer, Gunnar Jacobsen, Leonid G. Kazovsky, Erik Weis, Claus Popp Larsen, Pegah Tootoonchi Afshar, She-Hwa Yen, Anders Gavler
Publikováno v:
2010 12th International Conference on Transparent Optical Networks.
Next-generation optical access networks will deliver substantial benefits to consumers including a dedicated high-QoS access to bit rates of hundreds of Megabits per second. They must also deliver significant benefits to network owners/operators to j
Autor:
Leonid G. Kazovsky, Pegah Tootoonchi Afshar, Pedro Reviriego, David Larrabeiti, Juan Antonio Maestro, José Alberto Hernández
Publikováno v:
Scopus-Elsevier
The new Energy Efficient Ethernet standard will significantly improve the energy efficiency of 10Gbps copper transceivers. This paper compares the energy efficiency of 10Gbps Ethernet copper transceivers that implement the new standard with fiber tra
Autor:
Leonid G. Kazovsky, She-Hwa Yen, Pegah Tootoonchi Afshar, David Larrabeiti, Vinesh Gudla, Shing-Wa Wong
Publikováno v:
Advanced Photonics & Renewable Energy.
The latest advances in optical technologies bring new possibilities to the design of nextgeneration optical access networks. This paper outlines the main goals faced and the challenges to be addressed by researchers in this area.
Publikováno v:
Optical Fiber Communication Conference.
An energy conserving TDM-PON architecture using sleep mode ONU is presented. Sleep mode ONU with fast wake-up capability is demonstrated. The architecture employs novel just-in-time sleep control scheme to enhance energy conservation and buffering pe