Large-scale correlation network construction for unraveling the coordination of complex biological systems.

Autor: Becker M; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Computer Science and Electrical Engineering, University of Rostock, Rostock, Germany.; These authors contributed equally: Martin Becker, Huda Nassar, Camilo Espinosa., Nassar H; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA.; These authors contributed equally: Martin Becker, Huda Nassar, Camilo Espinosa., Espinosa C; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA.; These authors contributed equally: Martin Becker, Huda Nassar, Camilo Espinosa., Stelzer IA; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA., Feyaerts D; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA., Berson E; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Bidoki NH; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Chang AL; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Saarunya G; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Culos A; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., De Francesco D; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Fallahzadeh R; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Liu Q; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Kim Y; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Marić I; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Mataraso SJ; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Payrovnaziri SN; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Phongpreecha T; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pathology, Stanford University School of Medicine, Palo Alto, CA, USA., Ravindra NG; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Stanley N; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Shome S; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Tan Y; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Thuraiappah M; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Xenochristou M; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Xue L; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Shaw G; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA., Stevenson D; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA., Angst MS; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA., Gaudilliere B; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA., Aghaeepour N; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA.

Publikováno v: Nature computational science [Nat Comput Sci] 2023 Apr; Vol. 3 (4), pp. 346-359. Date of Electronic Publication: 2023 Apr 13.

Revealing the impact of lifestyle stressors on the risk of adverse pregnancy outcomes with multitask machine learning.

Autor: Becker M; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States.; Chair for Intelligent Data Analytics, Institute for Visual and Analytic Computing, Department of Computer Science and Electrical Engineering, University of Rostock, Rostock, Germany., Dai J; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Chang AL; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Feyaerts D; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States., Stelzer IA; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States., Zhang M; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Berson E; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Pathology, Stanford University, Palo Alto, CA, United States., Saarunya G; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., De Francesco D; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Espinosa C; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Kim Y; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Marić I; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Mataraso S; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Payrovnaziri SN; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Phongpreecha T; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States.; Department of Pathology, Stanford University, Palo Alto, CA, United States., Ravindra NG; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Shome S; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Tan Y; Department of Microbiology & Immunology, Stanford University, Palo Alto, CA, United States.; Baxter Laboratory for Stem Cell Biology, Stanford University, Palo Alto, CA, United States., Thuraiappah M; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Xue L; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Mayo JA; Department of Pediatrics, Stanford University, Palo Alto, CA, United States., Quaintance CC; Department of Pediatrics, Stanford University, Palo Alto, CA, United States., Laborde A; Department of Pediatrics, Stanford University, Palo Alto, CA, United States., King LS; Department of Psychology, Stanford University, Palo Alto, CA, United States., Dhabhar FS; Department of Psychiatry & Behavioral Science, University of Miami, Miami, FL, United States.; Department of Microbiology & Immunology, University of Miami, Miami, FL, United States.; Sylvester Comprehensive Cancer Center, University of Miami, Miami, FL, United States.; Miller School of Medicine, University of Miami, Miami, FL, United States., Gotlib IH; Department of Psychology, Stanford University, Palo Alto, CA, United States., Wong RJ; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States., Angst MS; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States., Shaw GM; Department of Pediatrics, Stanford University, Palo Alto, CA, United States., Stevenson DK; Department of Pediatrics, Stanford University, Palo Alto, CA, United States., Gaudilliere B; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States., Aghaeepour N; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Palo Alto, CA, United States.; Department of Pediatrics, Stanford University, Palo Alto, CA, United States.; Department of Biomedical Data Science, Stanford University, Palo Alto, CA, United States.

Publikováno v: Frontiers in pediatrics [Front Pediatr] 2022 Dec 13; Vol. 10, pp. 933266. Date of Electronic Publication: 2022 Dec 13 (Print Publication: 2022).

Assessing the Impact of Imputation on the Interpretations of Prediction Models: A Case Study on Mortality Prediction for Patients with Acute Myocardial Infarction.

Autor: Payrovnaziri SN; Florida State University, Tallahassee, Florida, USA., Xing A; Florida State University, Tallahassee, Florida, USA., Salman S; Florida State University, Tallahassee, Florida, USA., Liu X; Florida State University, Tallahassee, Florida, USA., Bian J; University of Florida, Gainesville, Florida, USA., He Z; Florida State University, Tallahassee, Florida, USA.

Publikováno v: AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science [AMIA Jt Summits Transl Sci Proc] 2021 May 17; Vol. 2021, pp. 465-474. Date of Electronic Publication: 2021 May 17 (Print Publication: 2021).

Explainable artificial intelligence models using real-world electronic health record data: a systematic scoping review.

Autor: Payrovnaziri SN; School of Information, Florida State University, Tallahassee, Florida, USA., Chen Z; Department of Health Outcomes and Biomedical Informatics, University of Florida, Gainesville, Florida, USA., Rengifo-Moreno P; College of Medicine, Florida State University, Tallahassee, Florida, USA.; Tallahassee Memorial Hospital, Tallahassee, Florida, USA., Miller T; School of Computing and Information Systems, The University of Melbourne, Melbourne, Victoria, Australia., Bian J; Department of Health Outcomes and Biomedical Informatics, University of Florida, Gainesville, Florida, USA., Chen JH; Center for Biomedical Informatics Research, Department of Medicine, Stanford University, Stanford, California, USA.; Division of Hospital Medicine, Department of Medicine, Stanford University, Stanford, California, USA., Liu X; Department of Computer Science, Florida State University, Tallahassee, Florida, USA., He Z; School of Information, Florida State University, Tallahassee, Florida, USA.

Publikováno v: Journal of the American Medical Informatics Association : JAMIA [J Am Med Inform Assoc] 2020 Jul 01; Vol. 27 (7), pp. 1173-1185.

Assessing the Use and Perception of Dietary Supplements Among Obese Patients with National Health and Nutrition Examination Survey.

Autor: He Z; School of Information, Florida State University, Tallahassee, Florida, USA., Barrett LA; School of Information, Florida State University, Tallahassee, Florida, USA., Rizvi R; Institute for Health Informatics and Department of Pharmaceutical Care & Health Systems, University of Minnesota, Minneapolis, Minnesota, USA., Tang X; Department of Statistics, Florida State University, Tallahassee, Florida, USA., Payrovnaziri SN; School of Information, Florida State University, Tallahassee, Florida, USA., Zhang R; Institute for Health Informatics and Department of Pharmaceutical Care & Health Systems, University of Minnesota, Minneapolis, Minnesota, USA.

Publikováno v: AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science [AMIA Jt Summits Transl Sci Proc] 2020 May 30; Vol. 2020, pp. 231-240. Date of Electronic Publication: 2020 May 30 (Print Publication: 2020).