Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Pawel Rubach"'
Autor:
Alexander Wlodawer, Zbigniew Dauter, Pawel Rubach, Wladek Minor, Joanna I. Loch, Dariusz Brzezinski, Miroslaw Gilski, Mariusz Jaskolski
Publikováno v:
IUCrJ, Vol 11, Iss 6, Pp 966-976 (2024)
The absence of solvent molecules in high-resolution protein crystal structure models deposited in the Protein Data Bank (PDB) contradicts the fact that, for proteins crystallized from aqueous media, water molecules are always expected to bind to the
Externí odkaz:
https://doaj.org/article/34e7ad461dbc4d8db9c0437fa3c8e9c6
Autor:
Agata P. Perlinska, Wanda H. Niemyska, Bartosz A. Gren, Marek Bukowicki, Szymon Nowakowski, Pawel Rubach, Joanna I. Sulkowska
Publikováno v:
Protein Science. 32
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::15f4a3d275587c112eaa6b8807c76c23
https://doi.org/10.1002/pro.4631
https://doi.org/10.1002/pro.4631
Autor:
Wanda Niemyska, Pawel Rubach, Bartosz A Gren, Mai Lan Nguyen, Wojciech Garstka, Fernando Bruno da Silva, Eric J Rawdon, Joanna I Sulkowska
Publikováno v:
Nucleic acids research.
AlphaKnot is a server that measures entanglement in AlphaFold-solved protein models while considering pLDDT confidence values. AlphaKnot has two main functions: (i) providing researchers with a webserver for analyzing knotting in their own AlphaFold
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::02f8f01cc3c795ac64647f7cee27f1b7
https://pubmed.ncbi.nlm.nih.gov/35609987
https://pubmed.ncbi.nlm.nih.gov/35609987
Autor:
David Bednar, Sucharita Dey, Emmanuel D. Levy, Natarajan Kannan, Bissan Al-Lazikani, Damiano Piovesan, Luis A Rodriguez, Sameer Velankar, Mihaly Varadi, Jan Stourac, Jaime Prilusky, Manjeet Kumar, Radoslav Krivak, Michael J.E. Sternberg, Juan Fernandez Recio, Daniel Zaidman, David R. Armstrong, Nathan J Rollins, Gulzar Singh, Jiri Damborsky, Dandan Xue, Stephen Anyango, Vivek Modi, Antonio Rosato, Christine A. Orengo, Valeria Putignano, Radka Svobodová, Alessia David, Debora S. Marks, Roland L. Dunbrack, Jose Ramon Macias, David Jakubec, Mark N. Wass, Luis Serrano, Silvio C. E. Tosatto, John M. Berrisford, Ahsan Tanweer, Sreenath Nair, Geoffrey J. Barton, Wim F. Vranken, Lukáš Pravda, Karel Berka, Stuart A McGowan, Janet M. Thornton, Nir London, Madhusudhan M Srivatsan, Lennart Martens, Atilio O Rausch, Toby J. Gibson, Pawel Rubach, Joanna I. Sulkowska, Petr Škoda, Gerardo Pepe, Nathalie Reuter, Natalia Tichshenko, Mandar Deshpande, Franca Fraternali, David Hoksza, Tom L. Blundell, R. Gonzalo Parra, Preeti Choudhary, José María Carazo, Claudia Andreini, Jake E McGreig, Leandro G Radusky, Thomas A. Hopf, Pathmanaban Ramasamy, Carlos Oscar S. Sorzano, Manuela Helmer-Citterich, Kelly P Brock, Nurul Nadzirin
Publikováno v:
Nucleic acids research
Nucleic Acids Research
Nucleic Acids Research (NAR)
D534-D542
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
D542
D534
Nucleic Acids Research
Nucleic Acids Research (NAR)
D534-D542
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
D542
D534
The Protein Data Bank in Europe – Knowledge Base (PDBe-KB, https://pdbe-kb.org) is an open collaboration between world-leading specialist data resources contributing functional and biophysical annotations derived from or relevant to the Protein Dat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::050cb89e62952b78f542717c68240da1
https://kar.kent.ac.uk/95049/1/gkab988.pdf
https://kar.kent.ac.uk/95049/1/gkab988.pdf
Autor:
Piotr Sułkowski, Eric J. Rawdon, Pawel Rubach, Kenneth C. Millett, Joanna I. Sulkowska, Andrzej Stasiak, Julien Dorier, Dimos Goundaroulis, Pawel Dabrowski-Tumanski
Publikováno v:
Nucleic Acids Research
Nucleic acids research, vol. 47, no. D1, pp. D367-D375
Nucleic acids research, vol 47, iss D1
Nucleic acids research, vol. 47, no. D1, pp. D367-D375
Nucleic acids research, vol 47, iss D1
The KnotProt 2.0 database (the updated version of the KnotProt database) collects information about proteins which form knots and other entangled structures. New features in KnotProt 2.0 include the characterization of both probabilistic and determin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b7ddeeb0fe0230ecfd8f8150059e8d08
http://europepmc.org/articles/PMC6323932
http://europepmc.org/articles/PMC6323932
Autor:
Wanda Niemyska, Pawel Dabrowski-Tumanski, Pawel Rubach, Bartosz Ambrozy Gren, Joanna I. Sulkowska
Publikováno v:
Briefings in Bioinformatics
The increasing role of topology in (bio)physical properties of matter creates a need for an efficient method of detecting the topology of a (bio)polymer. However, the existing tools allow one to classify only the simplest knots and cannot be used in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::df14c3a1bb01d57b7269f262608e0e09
http://europepmc.org/articles/PMC8138882
http://europepmc.org/articles/PMC8138882
Autor:
Pawel Rubach
Publikováno v:
Parallel and Distributed Computing and Networks / 720: Software Engineering.
Federated metacomputing environments allow requesters to dynamically invoke services offered by collaborating providers in the virtual service network. They evolve into metaoperating systems that form an intermediary layer between metaprograms - prog
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ad56125d338d8e0ab1369b3759e62272
https://doi.org/10.2316/p.2011.719-024
https://doi.org/10.2316/p.2011.719-024
The application of semantic technologies promises boosting business process management because semantic integration of business and IT is achieved. To enable the vision of semantic business process management, semantic technologies like ontologies, r
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0ec1899967f74c175ca41f24c6852c82
https://doi.org/10.4018/978-1-61520-965-1.ch412
https://doi.org/10.4018/978-1-61520-965-1.ch412
Autor:
Pawel Rubach, Michael Sobolewski
Publikováno v:
ICPP Workshops
Federated computing environments offer requestors the ability to dynamically invoke services offered by collaborating providers in the virtual service network. Without an efficient resource management, however, the assignment of providers to customer
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e4e701e9b8f491530a41f472648eeae3
https://doi.org/10.1109/icppw.2009.47
https://doi.org/10.1109/icppw.2009.47