Zobrazeno 1 - 10
of 52
pro vyhledávání: '"Pawan, Pandoh"'
Autor:
Andrew Mungall, Richard Moore, Giorgio Bertorelle, Yongjun Zhao, Valeria Angelini, Christopher Kyle, Pawan Pandoh, Sauro Pari, Helen McDonald, Heather Kirk, Dean Cheng, Eric Chuah, Kieran O'Neill, Kane Tse, Jahanshah Ashkani, Luka Culibrk, Samantha Jones, Sreeja Leelakumari, Glenn Chang, Steven Jones, Sibelle Vilaça
Publikováno v:
F1000Research, Vol 12 (2023)
We present a genome assembly of Caretta caretta (the Loggerhead sea turtle; Chordata, Testudines, Cheloniidae), generated from genomic data from two unrelated females. The genome sequence is 2.13 gigabases in size. The assembly has a busco completion
Externí odkaz:
https://doaj.org/article/0969dfd4ef164aeebf43e52b33a603b1
Autor:
Vahid Akbari, Jean-Michel Garant, Kieran O'Neill, Pawan Pandoh, Richard Moore, Marco A Marra, Martin Hirst, Steven JM Jones
Publikováno v:
eLife, Vol 11 (2022)
Imprinting is a critical part of normal embryonic development in mammals, controlled by defined parent-of-origin (PofO) differentially methylated regions (DMRs) known as imprinting control regions. Direct nanopore sequencing of DNA provides a means t
Externí odkaz:
https://doaj.org/article/1088926dbaf64c879577b7d74c27db85
Autor:
Vahid Akbari, Jean-Michel Garant, Kieran O’Neill, Pawan Pandoh, Richard Moore, Marco A. Marra, Martin Hirst, Steven J. M. Jones
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-21 (2021)
Abstract The ability of nanopore sequencing to simultaneously detect modified nucleotides while producing long reads makes it ideal for detecting and phasing allele-specific methylation. However, there is currently no complete software for detecting
Externí odkaz:
https://doaj.org/article/51d3851fb31a47f2a84dac10fb71833c
Autor:
S. Austin Hammond, René L. Warren, Benjamin P. Vandervalk, Erdi Kucuk, Hamza Khan, Ewan A. Gibb, Pawan Pandoh, Heather Kirk, Yongjun Zhao, Martin Jones, Andrew J. Mungall, Robin Coope, Stephen Pleasance, Richard A. Moore, Robert A. Holt, Jessica M. Round, Sara Ohora, Branden V. Walle, Nik Veldhoen, Caren C. Helbing, Inanc Birol
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-8 (2017)
The globally-distributed Ranidae (true frogs) are the largest frog family. Here, Hammond et al. present a draft genome of the North American bullfrog, Rana (Lithobates) catesbeiana, as a foundation for future understanding of true frog genetics as am
Externí odkaz:
https://doaj.org/article/73c0094c059c4ab19b4b752f09458fa7
Autor:
Simon Haile, Richard D. Corbett, Tina MacLeod, Steve Bilobram, Duane Smailus, Philip Tsao, Heather Kirk, Helen McDonald, Pawan Pandoh, Miruna Bala, Martin Hirst, Diane Miller, Richard A. Moore, Andrew J. Mungall, Jacquie Schein, Robin J. Coope, Yussanne Ma, Yongjun Zhao, Rob A. Holt, Steven J. Jones, Marco A. Marra
Publikováno v:
BMC Genomics, Vol 18, Iss 1, Pp 1-14 (2017)
Abstract Background RNA-Sequencing (RNA-seq) is now commonly used to reveal quantitative spatiotemporal snapshots of the transcriptome, the structures of transcripts (splice variants and fusions) and landscapes of expressed mutations. However, standa
Externí odkaz:
https://doaj.org/article/0567feec5d9240578c381c3fcd372ebe
Autor:
Simon Haile, Richard D Corbett, Steve Bilobram, Karen Mungall, Bruno M Grande, Heather Kirk, Pawan Pandoh, Tina MacLeod, Helen McDonald, Miruna Bala, Robin J Coope, Richard A Moore, Andrew J Mungall, Yongjun Zhao, Ryan D Morin, Steven J Jones, Marco A Marra
Publikováno v:
PLoS ONE, Vol 14, Iss 10, p e0224578 (2019)
Next generation RNA-sequencing (RNA-seq) is a flexible approach that can be applied to a range of applications including global quantification of transcript expression, the characterization of RNA structure such as splicing patterns and profiling of
Externí odkaz:
https://doaj.org/article/9968d3d49a8b44408b7c991245913ad8
Autor:
Simon Haile, Pawan Pandoh, Helen McDonald, Richard D Corbett, Philip Tsao, Heather Kirk, Tina MacLeod, Martin Jones, Steve Bilobram, Denise Brooks, Duane Smailus, Christian Steidl, David W Scott, Miruna Bala, Martin Hirst, Diane Miller, Richard A Moore, Andrew J Mungall, Robin J Coope, Yussanne Ma, Yongjun Zhao, Rob A Holt, Steven J Jones, Marco A Marra
Publikováno v:
PLoS ONE, Vol 12, Iss 6, p e0178706 (2017)
Curation and storage of formalin-fixed, paraffin-embedded (FFPE) samples are standard procedures in hospital pathology laboratories around the world. Many thousands of such samples exist and could be used for next generation sequencing analysis. Retr
Externí odkaz:
https://doaj.org/article/b12c07735fcc4b01b1aaaa704c35b598
Autor:
Glenn Chang, Samantha Jones, Sreeja Leelakumari, Jahanshah Ashkani, Luka Culibrk, Kieran O'Neill, Kane Tse, Dean Cheng, Eric Chuah, Helen McDonald, Heather Kirk, Pawan Pandoh, Sauro Pari, Valeria Angelini, Christopher Kyle, Giorgio Bertorelle, Yongjun Zhao, Andrew Mungall, Richard Moore, Sibelle Vilaça, Steven Jones
Publikováno v:
F1000Research. 12:336
We present a genome assembly of Caretta caretta (the Loggerhead sea turtle; Chordata, Testudines, Cheloniidae), generated from genomic data from two unrelated females. The genome sequence is 2.13 gigabases in size. The majority of the assembly is sca
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::40f74af08daafbc64f7805f0590a7a09
https://doi.org/10.12688/f1000research.131283.1
https://doi.org/10.12688/f1000research.131283.1
Autor:
Steven J.M. Jones, Pawan Pandoh, Kieran O'Neill, Marco A. Marra, Martin Hirst, Vahid Akbari, Richard D. Moore, Jean-Michel Garant
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-21 (2021)
Genome Biology
Genome Biology
The ability of nanopore sequencing to simultaneously detect modified nucleotides while producing long reads makes it ideal for detecting and phasing allele-specific methylation. However, there is currently no complete software for detecting SNPs, pha
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3303bb2c1f5f9a314acb7ec4bc1ef8b5
https://doaj.org/article/51d3851fb31a47f2a84dac10fb71833c
https://doaj.org/article/51d3851fb31a47f2a84dac10fb71833c