Zobrazeno 1 - 10
of 33
pro vyhledávání: '"Pavel Pevzner"'
Autor:
Sean Benler, Natalya Yutin, Dmitry Antipov, Mikhail Rayko, Sergey Shmakov, Ayal B. Gussow, Pavel Pevzner, Eugene V. Koonin
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-17 (2021)
Abstract Background Double-stranded DNA bacteriophages (dsDNA phages) play pivotal roles in structuring human gut microbiomes; yet, the gut virome is far from being fully characterized, and additional groups of phages, including highly abundant ones,
Externí odkaz:
https://doaj.org/article/3533cbb871954cbd950fed14fc5a3b75
Autor:
Tiago Leão, Mingxun Wang, Nathan Moss, Ricardo da Silva, Jon Sanders, Sergey Nurk, Alexey Gurevich, Gregory Humphrey, Raphael Reher, Qiyun Zhu, Pedro Belda-Ferre, Evgenia Glukhov, Syrena Whitner, Kelsey L. Alexander, Robert Rex, Pavel Pevzner, Pieter C. Dorrestein, Rob Knight, Nuno Bandeira, William H. Gerwick, Lena Gerwick
Publikováno v:
Marine Drugs, Vol 19, Iss 1, p 20 (2021)
Microbial natural products are important for the understanding of microbial interactions, chemical defense and communication, and have also served as an inspirational source for numerous pharmaceutical drugs. Tropical marine cyanobacteria have been h
Externí odkaz:
https://doaj.org/article/101512516a0548af860ab9e550043794
Autor:
Daniel McDonald, Embriette Hyde, Justine W. Debelius, James T. Morton, Antonio Gonzalez, Gail Ackermann, Alexander A. Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C. Dorrestein, Robert R. Dunn, Ashkaan K. Fahimipour, James Gaffney, Jack A. Gilbert, Grant Gogul, Jessica L. Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew A. Jackson, Stefan Janssen, Dilip V. Jeste, Lingjing Jiang, Scott T. Kelley, Dan Knights, Tomasz Kosciolek, Joshua Ladau, Jeff Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V. Melnik, Jessica L. Metcalf, Hosein Mohimani, Emmanuel Montassier, Jose Navas-Molina, Tanya T. Nguyen, Shyamal Peddada, Pavel Pevzner, Katherine S. Pollard, Gholamali Rahnavard, Adam Robbins-Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D. Swafford, Varykina G. Thackray, Luke R. Thompson, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Alison Vrbanac, Paul Wischmeyer, Elaine Wolfe, Qiyun Zhu, Rob Knight
Publikováno v:
mSystems, Vol 3, Iss 3 (2018)
ABSTRACT Although much work has linked the human microbiome to specific phenotypes and lifestyle variables, data from different projects have been challenging to integrate and the extent of microbial and molecular diversity in human stool remains unk
Externí odkaz:
https://doaj.org/article/0301cbad620f4f3490bc93e225ec5d0c
Autor:
R Cameron Coates, Sheila Podell, Anton Korobeynikov, Alla Lapidus, Pavel Pevzner, David H Sherman, Eric E Allen, Lena Gerwick, William H Gerwick
Publikováno v:
PLoS ONE, Vol 9, Iss 1, p e85140 (2014)
Cyanobacteria possess the unique capacity to naturally produce hydrocarbons from fatty acids. Hydrocarbon compositions of thirty-two strains of cyanobacteria were characterized to reveal novel structural features and insights into hydrocarbon biosynt
Externí odkaz:
https://doaj.org/article/3576f98f882f42e79b2a697f6a321395
Autor:
Rashel V Grindberg, Thomas Ishoey, Dumitru Brinza, Eduardo Esquenazi, R Cameron Coates, Wei-ting Liu, Lena Gerwick, Pieter C Dorrestein, Pavel Pevzner, Roger Lasken, William H Gerwick
Publikováno v:
PLoS ONE, Vol 6, Iss 4, p e18565 (2011)
Filamentous marine cyanobacteria are extraordinarily rich sources of structurally novel, biomedically relevant natural products. To understand their biosynthetic origins as well as produce increased supplies and analog molecules, access to the cluste
Externí odkaz:
https://doaj.org/article/ab750730540e4b89a80c5d1e6195d2d8
Publikováno v:
PLoS ONE, Vol 2, Iss 5, p e484 (2007)
While recently developed short-read sequencing technologies may dramatically reduce the sequencing cost and eventually achieve the $1000 goal for re-sequencing, their limitations prevent the de novo sequencing of eukaryotic genomes with the standard
Externí odkaz:
https://doaj.org/article/ab80936f3c4a4460ae28e8fceb6878b0
Publikováno v:
Journal of Computational Biology. 29:601-615
On the occasion of Dr. Michael Waterman's 80th birthday, we review his major contributions to the field of computational biology and bioinformatics including the famous Smith-Waterman algorithm for sequence alignment, the probability and statistics t
Publikováno v:
Journal of Computational Biology. 29:599-600
Autor:
Pavel Pevzner
Publikováno v:
BIBM
While some experimental biologists view bioinformatics as a servant, I argue that it is rapidly turning into the queen of molecular biology. I will illustrate this view by showing how recent computational developments brought down biological dogmas t
Autor:
Zhoutao Chen, Long Pham, Tsai-Chin Wu, Guoya Mo, Yu Xia, Peter L. Chang, Devin Porter, Tan Phan, Huu Che, Hao Tran, Vikas Bansal, Justin Shaffer, Pedro Belda-Ferre, Greg Humphrey, Rob Knight, Pavel Pevzner, Son Pham, Yong Wang, Ming Lei
Publikováno v:
Genome Res
Long-range sequencing information is required for haplotype phasing, de novo assembly, and structural variation detection. Current long-read sequencing technologies can provide valuable long-range information but at a high cost with low accuracy and