Zobrazeno 1 - 10
of 39
pro vyhledávání: '"Pavel Merkulov"'
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-11 (2024)
Abstract Transposable elements (TEs) are a major force in the evolution of plant genomes. Differences in the transposition activities and landscapes of TEs can vary substantially, even in closely related species. Interspecific hybridization, a widely
Externí odkaz:
https://doaj.org/article/5633c6dc41fa4f4f88335b8debb52840
Autor:
Ekaterina Polkhovskaya, Ivan Gruzdev, Evgeniy Moskalev, Pavel Merkulov, Anna Bolotina, Alexander Soloviev, Ilya Kirov
Publikováno v:
Agronomy, Vol 14, Iss 1, p 13 (2023)
Genetic variation in high molecular weight glutenin (HMW-GS) genes is tightly linked with the breadmaking quality of wheat. Hundreds of different alleles have been identified in HMW-GS genes worldwide. Such huge variability makes it difficult to dist
Externí odkaz:
https://doaj.org/article/126bd1b285804fbf9f525860f31aa9cb
Publikováno v:
Plants, Vol 12, Iss 11, p 2178 (2023)
Extrachromosomal circular DNAs (eccDNAs) are enigmatic DNA molecules that have been detected in a range of organisms. In plants, eccDNAs have various genomic origins and may be derived from transposable elements. The structures of individual eccDNA m
Externí odkaz:
https://doaj.org/article/eda7c13764df48e8bdcf591e96c97e72
Autor:
Ekaterina Polkhovskaya, Anna Bolotina, Pavel Merkulov, Maxim Dudnikov, Alexander Soloviev, Ilya Kirov
Publikováno v:
Agronomy, Vol 13, Iss 2, p 292 (2023)
Developing seed is a unique stage of plant development with highly dynamic changes in transcriptome. Here, we aimed to detect the novel previously unannotated, genes of the triticale (x Triticosecale Wittmack, AABBRR genome constitution) genome that
Externí odkaz:
https://doaj.org/article/a036dc4a41004f079a282a5be50f89db
Autor:
Ilya Kirov, Pavel Merkulov, Ekaterina Polkhovskaya, Zakhar Konstantinov, Mikhail Kazancev, Ksenia Saenko, Alexander Polkhovskiy, Maxim Dudnikov, Tsovinar Garibyan, Yakov Demurin, Alexander Soloviev
Publikováno v:
Plants, Vol 11, Iss 24, p 3579 (2022)
Transposable elements (TEs) contribute not only to genome diversity but also to transcriptome diversity in plants. To unravel the sources of LTR retrotransposon (RTE) transcripts in sunflower, we exploited a recently developed transposon activation m
Externí odkaz:
https://doaj.org/article/50338786f0bb4609bf7b2a5e8e2b4e73
Autor:
Ilya Kirov, Sergey Odintsov, Murad Omarov, Sofya Gvaramiya, Pavel Merkulov, Maxim Dudnikov, Alexey Ermolaev, Katrijn Van Laere, Alexander Soloviev, Ludmila Khrustaleva
Publikováno v:
Frontiers in Plant Science, Vol 11 (2020)
The centromere is a unique part of the chromosome combining a conserved function with an extreme variability in its DNA sequence. Most of our knowledge about the functional centromere organization is obtained from species with small and medium genome
Externí odkaz:
https://doaj.org/article/f90d6cd71adf4f8f87579f9ab1b934fc
Autor:
Ilya Kirov, Ekaterina Polkhovskaya, Maxim Dudnikov, Pavel Merkulov, Anastasia Vlasova, Gennady Karlov, Alexander Soloviev
Publikováno v:
Plants, Vol 11, Iss 1, p 5 (2021)
Sequencing and epigenetic profiling of target genes in plants are important tasks with various applications ranging from marker design for plant breeding to the study of gene expression regulation. This is particularly interesting for plants with big
Externí odkaz:
https://doaj.org/article/37ca213ad05844ed83319da73d205aaf
Autor:
Ilya Kirov, Pavel Merkulov, Maxim Dudnikov, Ekaterina Polkhovskaya, Roman A. Komakhin, Zakhar Konstantinov, Sofya Gvaramiya, Aleksey Ermolaev, Natalya Kudryavtseva, Marina Gilyok, Mikhail G. Divashuk, Gennady I. Karlov, Alexander Soloviev
Publikováno v:
Plants, Vol 10, Iss 12, p 2681 (2021)
Long-read data is a great tool to discover new active transposable elements (TEs). However, no ready-to-use tools were available to gather this information from low coverage ONT datasets. Here, we developed a novel pipeline, nanotei, that allows dete
Externí odkaz:
https://doaj.org/article/f9479f2c47294c1e8b054bcf0264ea9f
Autor:
Ilya Kirov, Murad Omarov, Pavel Merkulov, Maxim Dudnikov, Sofya Gvaramiya, Elizaveta Kolganova, Roman Komakhin, Gennady Karlov, Alexander Soloviev
Publikováno v:
International Journal of Molecular Sciences, Vol 21, Iss 23, p 9331 (2020)
LTR retrotransposons (RTEs) play a crucial role in plant genome evolution and adaptation. Although RTEs are generally silenced in somatic plant tissues under non-stressed conditions, some expressed RTEs (exRTEs) escape genome defense mechanisms. As o
Externí odkaz:
https://doaj.org/article/447cfbb7953149e7a8f481fae6dd06d8
Autor:
Ilya Kirov, Maxim Dudnikov, Pavel Merkulov, Andrey Shingaliev, Murad Omarov, Elizaveta Kolganova, Alexandra Sigaeva, Gennady Karlov, Alexander Soloviev
Publikováno v:
Plants, Vol 9, Iss 12, p 1794 (2020)
The intergenic space of plant genomes encodes many functionally important yet unexplored RNAs. The genomic loci encoding these RNAs are often considered “junk”, DNA as they are frequently associated with repeat-rich regions of the genome. The lat
Externí odkaz:
https://doaj.org/article/ff81200147df4d10b0f362a158edb424