Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Paul Stapor"'
Autor:
Lorenzo Contento, Noemi Castelletti, Elba Raimúndez, Ronan Le Gleut, Yannik Schälte, Paul Stapor, Ludwig Christian Hinske, Michael Hoelscher, Andreas Wieser, Katja Radon, Christiane Fuchs, Jan Hasenauer
Publikováno v:
Epidemics, Vol 43, Iss , Pp 100681- (2023)
Mathematical models have been widely used during the ongoing SARS-CoV-2 pandemic for data interpretation, forecasting, and policy making. However, most models are based on officially reported case numbers, which depend on test availability and test s
Externí odkaz:
https://doaj.org/article/631aacf567a64475a0fa2624ace99e32
Autor:
Paul Stapor, Leonard Schmiester, Christoph Wierling, Simon Merkt, Dilan Pathirana, Bodo M. H. Lange, Daniel Weindl, Jan Hasenauer
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-17 (2022)
Ordinary differential equation (ODE) models are widely used to understand multiple processes. Here the authors show how the concept of mini-batch optimization can be transferred from the field of Deep Learning to ODE modelling.
Externí odkaz:
https://doaj.org/article/0f2289d315c2486cb8004fb1365b28cf
Autor:
Polina Lakrisenko, Paul Stapor, Stephan Grein, Łukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich, Glenn Terje Lines, Daniel Weindl, Jan Hasenauer
Publikováno v:
PLoS Computational Biology, Vol 19, Iss 1, p e1010783 (2023)
Dynamical models in the form of systems of ordinary differential equations have become a standard tool in systems biology. Many parameters of such models are usually unknown and have to be inferred from experimental data. Gradient-based optimization
Externí odkaz:
https://doaj.org/article/154d58c3a25b4b748e7ec79817755d57
Autor:
Lorenz Adlung, Paul Stapor, Christian Tönsing, Leonard Schmiester, Luisa E. Schwarzmüller, Lena Postawa, Dantong Wang, Jens Timmer, Ursula Klingmüller, Jan Hasenauer, Marcel Schilling
Publikováno v:
Cell Reports, Vol 36, Iss 6, Pp 109507- (2021)
Summary: Survival or apoptosis is a binary decision in individual cells. However, at the cell-population level, a graded increase in survival of colony-forming unit-erythroid (CFU-E) cells is observed upon stimulation with erythropoietin (Epo). To id
Externí odkaz:
https://doaj.org/article/5617193dcfb84ba8a18ca70503aa9096
Autor:
Lorenzo Contento, Noemi Castelletti, Elba Raimúndez, Ronan Le Gleut, Yannik Schälte, Paul Stapor, Ludwig Christian Hinske, Michael Hoelscher, Andreas Wieser, Katja Radon, Christiane Fuchs, Jan Hasenauer
Mathematical models have been widely used during the ongoing SARS-CoV-2 pandemic for data interpretation, forecasting, and policy making. However, most models are based on officially reported case numbers, which depend on test availability and test s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::96dd16d957c638bda047635aee59355d
https://pub.uni-bielefeld.de/record/2958646
https://pub.uni-bielefeld.de/record/2958646
Autor:
Kerstin Puchinger, Noemi Castelletti, Raquel Rubio-Acero, Christof Geldmacher, Tabea M. Eser, Flora Deák, Ivana Paunovic, Abhishek Bakuli, Elmar Saathoff, Alexander von Meyer, Alisa Markgraf, Philine Falk, Jakob Reich, Friedrich Riess, Philipp Girl, Katharina Müller, Katja Radon, Jessica Michelle Guggenbuehl Noller, Roman Wölfel, Michael Hoelscher, Inge Kroidl, Andreas Wieser, Laura Olbrich, Emad Alamoudi, Jared Anderson, Maximilian Baumann, Marieke Behlen, Jessica Beyerl, Rebecca Böhnlein, Anna Brauer, Vera Britz, Jan Bruger, Friedrich Caroli, Lorenzo Contento, Jana Diekmannshemke, Anna Do, Gerhard Dobler, Ute Eberle, Judith Eckstein, Jonathan Frese, Felix Forster, Turid Frahnow, Günter Fröschl, Otto Geisenberger, Kristina Gillig, Arlett Heiber, Christian Hinske, Janna Hoefflin, Tim Hofberger, Michael Höfinger, Larissa Hofmann, Sacha Horn, Kristina Huber, Christian Janke, Ursula Kappl, Charlotte Kiani, Arne Kroidl, Michael Laxy, Reiner Leidl, Felix Lindner, Rebecca Mayrhofer, Anna-Maria Mekota, Hannah Müller, Dafni Metaxa, Leonie Pattard, Michel Pletschette, Stephan Prückner, Konstantin Pusl, Elba Raimúndez, Camila Rothe, Nicole Schäfer, Paul Schandelmaier, Lara Schneider, Sophie Schultz, Mirjam Schunk, Lars Schwettmann, Heidi Seibold, Peter Sothmann, Paul Stapor, Fabian Theis, Verena Thiel, Sophie Thiesbrummel, Niklas Thur, Julia Waibel, Claudia Wallrauch, Simon Winter, Julia Wolff, Pia Wullinger, Houda Yaqine, Sabine Zange, Eleftheria Zeggini, Thomas Zimmermann, Anna Zielke, Mohamed Ibraheem, Mohamed Ahmed, Marc Becker, Paulina Diepers, Yannik Schälte, Mercè Garí, Peter Pütz, Michael Pritsch, Volker Fingerle, Ronan Le Gleut, Leonard Gilberg, Isabel Brand, Max Diefenbach, Tabea Eser, Franz Weinauer, Silke Martin, Ernst-Markus Quenzel, Jürgen Durner, Christiane Fuchs, Jan Hasenauer
Publikováno v:
Virology 569, 37-43 (2022)
Risk factors for disease progression and severity of SARS-CoV-2 infections require an understanding of acute and long-term virological and immunological dynamics. Fifty-one RT-PCR positive COVID-19 outpatients were recruited between May and December
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::919df2d86063f054ff5754de7d43e04d
https://opus.bibliothek.uni-augsburg.de/opus4/files/95756/1-s2.0-S0042682222000241-main.pdf
https://opus.bibliothek.uni-augsburg.de/opus4/files/95756/1-s2.0-S0042682222000241-main.pdf
Autor:
Andreas Wieser, Elba Raimúndez, Katja Radon, Jan Hasenauer, Yannik Schaelte, Michael Hoelscher, Le Gleut R, Noemi Castelletti, Paul Stapor, Lorenzo Contento, Christiane Fuchs, Hinske Lc
Mathematical models have been widely used during the ongoing SARS-CoV-2 pandemic for data interpretation, forecasting, and policy making. However, most models are based on officially reported case numbers, which depend on test availability and test s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1409f0e4c0a64f3a128598d1fe046361
https://doi.org/10.1101/2021.10.01.21263052
https://doi.org/10.1101/2021.10.01.21263052
Autor:
Leonard Schmiester, Fabian Fröhlich, Alejandro F. Villaverde, Dilan Pathirana, Julio R. Banga, Polina Lakrisenko, Jens Timmer, Svenja Kemmer, Simon Merkt, Janine Egert, Carolin Loos, Philipp Städter, Clemens Kreutz, Dantong Wang, Lukas Refisch, Wolfgang Müller, Yannik Schälte, Sven Sahle, Erika Dudkin, Elba Raimúndez, Frank Bergmann, Tacio Camba, Franz-Georg Wieland, Adrian L. Hauber, Marcus Rosenblatt, Lara Fuhrmann, Jan Hasenauer, Daniel Weindl, Paul Stapor
Publikováno v:
PLoS Computational Biology
Digital.CSIC. Repositorio Institucional del CSIC
instname
PLoS Computational Biology, Vol 17, Iss 1, p e1008646 (2021)
PLoS Comput. Biol. 17:e1008646 (2021)
Digital.CSIC. Repositorio Institucional del CSIC
instname
PLoS Computational Biology, Vol 17, Iss 1, p e1008646 (2021)
PLoS Comput. Biol. 17:e1008646 (2021)
10 pages, 3 figures, 2 tables.-- This is an open access article distributed under the terms of the Creative Commons Attribution License
Reproducibility and reusability of the results of data-based modeling studies are essential. Yet, there has b
Reproducibility and reusability of the results of data-based modeling studies are essential. Yet, there has b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c27de8a954c01d2157d8eca29501d320
https://hdl.handle.net/11093/3682
https://hdl.handle.net/11093/3682
Publikováno v:
Scientific Reports
Sci. Rep. 11:2696 (2021)
Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
Sci. Rep. 11:2696 (2021)
Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
Ordinary differential equation (ODE) models are a key tool to understand complex mechanisms in systems biology. These models are studied using various approaches, including stability and bifurcation analysis, but most frequently by numerical simulati
Autor:
Łukasz Paszkowski, Daniel Weindl, Dilan Pathirana, Glenn T. Lines, Fabian Fröhlich, Paul Stapor, Jan Hasenauer, Yannik Schälte
Publikováno v:
Bioinformatics
Bioinformatics 37, 3676-3677 (2021)
Bioinformatics 37, 3676-3677 (2021)
Summary Ordinary differential equation models facilitate the understanding of cellular signal transduction and other biological processes. However, for large and comprehensive models, the computational cost of simulating or calibrating can be limitin