Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Paul Predki"'
Publikováno v:
J Virol
Previous studies by our group identified a highly efficacious vaccine 0ΔNLS (deficient in the nuclear localization signal of infected cell protein 0) against herpes simplex virus 1 (HSV-1) in an experimental ocular mouse model. However, details rega
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b7cb27931c4ae3cc9053e1007583a9cc
https://europepmc.org/articles/PMC8941882/
https://europepmc.org/articles/PMC8941882/
Autor:
Tony R. Hazbun, Stanley Fields, Jing Huang, Gregory A. Michaud, Fulai Jin, Paul Predki, Michael Salcius
Publikováno v:
Nature Methods. 3:183-189
The generation of large-scale data sets is a fundamental requirement of systems biology. But despite recent advances, generation of such high-coverage data remains a major challenge. We developed a pooling-deconvolution strategy that can dramatically
Autor:
Nancy Hammon, Arthur Kobayashi, Stacey Black, Uffe Hellsten, Daniel S. Rokhsar, Lauren Haydu, Frederick Lopez, Nina Thayer, Diego Martinez, Mirian Denys, Paul Predki, Laurie Gordon, Eva Bajorek, Eidelyn Gonzales, Catherine Medina, Richard D. Nandkeshwar, Sanjay Israni, Richard M. Myers, Hope Tice, Jean F. Challacombe, Anne O. Olsen, Chenier Caoile, State Lowry, Alex Rodriguez, Paul G. Richardson, Kevin Wu, D. Scott, Xinwei She, Matthew Groza, James P. Noonan, Anna Ustaszewska, María Laura Ríos Gómez, Jane Grimwood, Jeremy Wheeler, Len A. Pennacchio, Martin O. Pollard, Tijana Glavina, Dea Fotopulos, Joel Martin, Heather Kimbal, Kristen Kadner, Dave Flowers, Joan Yang, Astrid Terry, Lucía Ramírez, Ming Tsai, Yee Man Chan, Michael R. Altherr, Susan Lucas, Jan Fang Cheng, Sam Pitluck, Sam Rash, Igor V. Grigoriev, Wayne Huang, Yunian Lou, Chris Detter, Shyam Prabhakar, James Priest, Angelica Salazar, Gary Xie, Nu Vo, Elbert Branscomb, Jamie Jett, Stephanie Rogers, David Goodstenin, Olivier Couronne, Julio Escobar, James Retterer, Mary Bao Tran-Gyamfi, Trevor Hawkins, Jeremy Schmutz, Evan E. Eichler, Andrea Aerts, Mark Dickson, Jenna Morgan, Edward M. Rubin, Asaf Salamov
Publikováno v:
Nature. 431:268-274
Chromosome 5 is one of the largest human chromosomes and contains numerous intrachromosomal duplications, yet it has one of the lowest gene densities. This is partially explained by numerous gene-poor regions that display a remarkable degree of nonco
Autor:
Paul Predki, Xiaochun Yu, Stuart E. Denman, Amber Vanden Wymelenberg, Daniel Cullen, Jennifer Bassett, Tuula T. Teeri, Diane Dietrich, Ulla Rudsander, Rajai H. Atalla
Publikováno v:
Applied and Environmental Microbiology. 68:5765-5768
Phanerochaete chrysosporium cellulase genes were cloned and characterized. The cel61A product was structurally similar to fungal endoglucanases of glycoside hydrolase family 61, whereas the cel9A product revealed similarities to Thermobifida fusca Ce
Autor:
Trevor Hawkins, Iain Anderson, Eugene Selkov, William S. Feil, Helene Feil, Athanasios Lykidis, Ross Overbeek, Robert Edwards, Axel Bernal, Stephanie Stilwagen, Gary Reznik, Natalia Ivanova, Paul Predki, Niels Larsen, Mark D'Souza, Theresa L. Walunas, Vinayak Kapatral, Alexander H. Purcell, Tamara Los, Robert Haselkorn, Nikos C. Kyrpides, Anamitra Bhattacharyya
Publikováno v:
Genome Research. 12:1556-1563
Xylella fastidiosa is a Gram-negative bacterium belonging to the gamma subgroup of the proteobacteria (Wells et al. 1987). This microorganism is an important plant pathogen causing many economically important crop diseases, such as Pierce's disease (
Autor:
Gustavo Glusman, Daniel S. Rokhsar, Chris Detter, Greg Elgar, Paramvir S. Dehal, Susan Lucas, Sarah Smith, Melody S. Clark, Dmitry Pruss, Sean V. Tavtigian, Jarrod Chapman, Trevor Hawkins, Byrappa Venkatesh, Paul Predki, Y. H. Tan, Elia Stupka, Isaac Ho, Shawn Hoon, Justin Powell, Holly Baden, Tania Oh, Jared C. Roach, Marie Wong, Sam Rash, Leroy Hood, Nik Putnam, Arian F.A. Smit, Cheryl Evans, Paul G. Richardson, Jer Ming Chia, Alice Tay, Norman A. Doggett, Frans Verhoef, Maarten D. Sollewijn Gelpke, Mary Barnstead, Yvonne J. K. Edwards, Samuel Aparicio, Andrey Zharkikh, Alan Christoffels, Sydney Brenner, Lee Rowen
Publikováno v:
Science. 297:1301-1310
The compact genome ofFugu rubripeshas been sequenced to over 95% coverage, and more than 80% of the assembly is in multigene-sized scaffolds. In this 365-megabase vertebrate genome, repetitive DNA accounts for less than one-sixth of the sequence, and
Autor:
Christopher J. Elkin, Qing Zhang, Paul G. Richardson, Joomyeong Kim, Paramvir S. Dehal, Lisa Stubbs, Paul Predki, Peg Folta, Carol L. Ecale Zhou, Susan Lucas, Trevor Hawkins, Anne S. Olsen, Daniel S. Rokhsar, Elbert Branscomb, Laurie Gordon, Martin Pollard, Astrid Terry, Miriam Land, Ed Uberbacher, Art Kobayashi, Sam Rash
Publikováno v:
Science. 293:104-111
To illuminate the function and evolutionary history of both genomes, we sequenced mouse DNA related to human chromosome 19. Comparative sequence alignments yielded confirmatory evidence for hypothetical genes and identified exons, regulatory elements
Autor:
Paul Predki, Martin Pollard, Tijana Glavina, Nancy Hammon, Christopher J. Elkin, Trevor Hawkins, H. Matthew Fourcade, Paul G. Richardson
Publikováno v:
Genome Research. 11:1269-1274
The need for expeditious and inexpensive methods for high-throughput DNA sequencing has been highlighted by the accelerated pace of genome DNA sequencing over the past year. At the Joint Genome Institute, the throughput in terms of high-quality bases
Autor:
Jane Lamerdin, Teresa Thiel, Ronald M. Atlas, Frank W. Larimer, Jeff Elhai, Malcolm Potts, Paul Predki, John C. Meeks
Publikováno v:
Photosynthesis Research. 70:85-106
Nostoc punctiforme is a filamentous cyanobacterium with extensive phenotypic characteristics and a relatively large genome, approaching 10 Mb. The phenotypic characteristics include a photoautotrophic, diazotrophic mode of growth, but N. punctiforme
Autor:
Stephanie Stilwagen, Christopher Mackenzie, Samuel Kaplan, James P. Shapleigh, Jill Zeilstra-Ryalls, R E Sockett, Paul Predki, Madhusudan Choudhary, Judith P. Armitage, J E Newman, Frank W. Larimer, Jonathan P. Hosler, Robert D. Barber, Timothy J. Donohue
Publikováno v:
Photosynthesis Research. 70:19-41
Rhodobacter sphaeroides 2.4.1 is an α-3 purple nonsulfur eubacterium with an extensive metabolic repertoire. Under anaerobic conditions, it is able to grow by photosynthesis, respiration and fermentation. Photosynthesis may be photoheterotrophic usi