Zobrazeno 1 - 10
of 22
pro vyhledávání: '"Paul O. Sheridan"'
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-14 (2023)
Abstract Knowledge of deeply-rooted non-ammonia oxidising Thaumarchaeota lineages from terrestrial environments is scarce, despite their abundance in acidic soils. Here, 15 new deeply-rooted thaumarchaeotal genomes were assembled from acidic topsoils
Externí odkaz:
https://doaj.org/article/4d9dacffca274cc1a26c7c0137a0151d
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-13 (2022)
Genome recovery of the order Lutacidiplasmatales reveals that key genes for environmental specialisation were acquired multiple times in the Thermoplasmatota phylum, suggesting a crucial role of convergent evolution in archaeal habitat adaptation.
Externí odkaz:
https://doaj.org/article/a7717a5031bd488c951d919aebe2dea4
Autor:
Paul O. Sheridan, Sebastien Raguideau, Christopher Quince, Jennifer Holden, Lihong Zhang, Thames Consortium, Tom A. Williams, Cécile Gubry-Rangin
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Ammonia-oxidising archaea of the phylum Thaumarchaeota are important organisms in the nitrogen cycle. Using 12 new genomes, this study finds evidence that Nitrososphaerales evolution was marked by lateral gene transfer followed by gene duplication.
Externí odkaz:
https://doaj.org/article/a7e1e7552ca849d9b63e7dee319b63df
Autor:
Xiaolei Ze, Yonit Ben David, Jenny A. Laverde-Gomez, Bareket Dassa, Paul O. Sheridan, Sylvia H. Duncan, Petra Louis, Bernard Henrissat, Nathalie Juge, Nicole M. Koropatkin, Edward A. Bayer, Harry J. Flint
Publikováno v:
mBio, Vol 6, Iss 5 (2015)
ABSTRACT Ruminococcus bromii is a dominant member of the human gut microbiota that plays a key role in releasing energy from dietary starches that escape digestion by host enzymes via its exceptional activity against particulate “resistant” starc
Externí odkaz:
https://doaj.org/article/2a363ea495f24b07a2f9cf311e4aa5d8
Knowledge of deeply-rooted non-ammonia oxidising Thaumarchaeota lineages from terrestrial environments is scarce, despite their abundance in acidic soils. Here, 15 new deeply-rooted thaumarchaeotal genomes were assembled from acidic topsoils (0-15cm)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::523190bb889f30a616a9b385e237bfdf
https://doi.org/10.1101/2023.03.08.531495
https://doi.org/10.1101/2023.03.08.531495
Autor:
Brogan J, Harris, Paul O, Sheridan, Adrián A, Davín, Cécile, Gubry-Rangin, Gergely J, Szöllősi, Tom A, Williams
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2569
Interpreting phylogenetic trees requires a root, which provides the direction of evolution and polarizes ancestor-descendant relationships. But inferring the root using genetic data is difficult, particularly in cases where the closest available outg
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::70d6ed23982a70110ae0226c5f717647
https://pubmed.ncbi.nlm.nih.gov/36083449
https://pubmed.ncbi.nlm.nih.gov/36083449
The archaeal Terrestrial Miscellaneous Euryarchaeota Group (TMEG) has been identified in various environments, and the single genome investigated thus far suggests that these organisms are anaerobic sulfite reducers. We assembled 35 new TMEG genomes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::54febe8dfe19fa9268f76ff888ae6a97
https://doi.org/10.1101/2022.02.02.478836
https://doi.org/10.1101/2022.02.02.478836
Autor:
Paul O. Sheridan, Petra Louis, Eleni Tsompanidou, Sophie Shaw, Hermie J. Harmsen, Sylvia H. Duncan, Harry J. Flint, Alan W. Walker
Publikováno v:
Microbial genomics, 8(1):000739. AMER SOC MICROBIOLOGY
Lactate accumulation in the human gut is linked to a range of deleterious health impacts. However, lactate is consumed and converted to the beneficial short-chain fatty acids butyrate and propionate by indigenous lactate-utilizing bacteria. To better
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f2471be0a44b5deeba0ecbbfe53671d1
https://hdl.handle.net/11370/3c2a1d6d-557f-4e56-bca2-d90975102ab5
https://hdl.handle.net/11370/3c2a1d6d-557f-4e56-bca2-d90975102ab5
Autor:
Brogan J. Harris, Paul O. Sheridan, Adrián A. Davín, Cécile Gubry-Rangin, Gergely J. Szöllősi, Tom A. Williams
Publikováno v:
Methods in Molecular Biology ISBN: 9781071626900
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5ab813cec2dcb84441d9d14e7d7da07f
https://doi.org/10.1007/978-1-0716-2691-7_9
https://doi.org/10.1007/978-1-0716-2691-7_9
Publikováno v:
Microbiome Research Reports. 2:1
Recent years have seen the development of high-accuracy and high-throughput genetic manipulation techniques, which have greatly improved our understanding of genetically tractable microbes. However, challenges remain in establishing genetic manipulat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9cb44f16608cadf6f3c19b79cb45d1a9
https://doi.org/10.20517/mrr.2022.13
https://doi.org/10.20517/mrr.2022.13