Reply to the Letter to the Editor by Paul O. Sheridan, Sylvia H. Duncan, Alan W. Walker, Karen P. Scott, Petra Louis and Harry J. Flint, referring to our paper 'Reclassification of Eubacterium rectale (Prévot et al. 1967) in a new genus Agathobacter gen. nov., as Agathobacter rectalis comb. nov., within the family Lachnospiraceae, and description of Agathobacter ruminis sp. nov., from the rumen', Int J Syst Evol Microbiol, DOI 10.1099/ijsem.0.000788.

Autor: Rosero JA; Institute of Animal Physiology and Genetics, The Czech Academy of Sciences, v.v.i.,Vídenská 1083, Prague 4 - Krc 142 20,Czech Republic., Killer J; Institute of Animal Physiology and Genetics, The Czech Academy of Sciences, v.v.i.,Vídenská 1083, Prague 4 - Krc 142 20,Czech Republic., Sechovcová H; Institute of Animal Physiology and Genetics, The Czech Academy of Sciences, v.v.i.,Vídenská 1083, Prague 4 - Krc 142 20,Czech Republic., Mrázek J; Institute of Animal Physiology and Genetics, The Czech Academy of Sciences, v.v.i.,Vídenská 1083, Prague 4 - Krc 142 20,Czech Republic., Benada O; Prague Infrastructure for Structure Biology and Metabolomics II, Institute of Microbiology, The Czech Academy of Sciences, v.v.i.,Vídenská 1083, 142 20 Prague 4,Czech Republic., Fliegerová K; Institute of Animal Physiology and Genetics, The Czech Academy of Sciences, v.v.i.,Vídenská 1083, Prague 4 - Krc 142 20,Czech Republic., Havlík J; Department of Microbiology, Nutrition and Dietetics, Czech University of Life Sciences,Kamýcká 129, Prague 6 - Suchdol 165 21,Czech Republic., Kopečný J; Institute of Animal Physiology and Genetics, The Czech Academy of Sciences, v.v.i.,Vídenská 1083, Prague 4 - Krc 142 20,Czech Republic.

Publikováno v: International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2016 May; Vol. 66 (5), pp. 2107. Date of Electronic Publication: 2016 Feb 26.

Gene duplication drives genome expansion in a major lineage of Thaumarchaeota

Autor: Paul O. Sheridan, Sebastien Raguideau, Christopher Quince, Jennifer Holden, Lihong Zhang, Thames Consortium, Tom A. Williams, Cécile Gubry-Rangin

Publikováno v: Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)

Ammonia-oxidising archaea of the phylum Thaumarchaeota are important organisms in the nitrogen cycle. Using 12 new genomes, this study finds evidence that Nitrososphaerales evolution was marked by lateral gene transfer followed by gene duplication.

Externí odkaz: https://doaj.org/article/a7e1e7552ca849d9b63e7dee319b63df

Rooting Species Trees Using Gene Tree-Species Tree Reconciliation

Autor: Brogan J, Harris, Paul O, Sheridan, Adrián A, Davín, Cécile, Gubry-Rangin, Gergely J, Szöllősi, Tom A, Williams

Publikováno v: Methods in molecular biology (Clifton, N.J.). 2569

Interpreting phylogenetic trees requires a root, which provides the direction of evolution and polarizes ancestor-descendant relationships. But inferring the root using genetic data is difficult, particularly in cases where the closest available outg

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::70d6ed23982a70110ae0226c5f717647
https://pubmed.ncbi.nlm.nih.gov/36083449

Distribution, organization and expression of genes concerned with anaerobic lactate utilization in human intestinal bacteria

Autor: Paul O. Sheridan, Petra Louis, Eleni Tsompanidou, Sophie Shaw, Hermie J. Harmsen, Sylvia H. Duncan, Harry J. Flint, Alan W. Walker

Publikováno v: Microbial genomics, 8(1):000739. AMER SOC MICROBIOLOGY

Lactate accumulation in the human gut is linked to a range of deleterious health impacts. However, lactate is consumed and converted to the beneficial short-chain fatty acids butyrate and propionate by indigenous lactate-utilizing bacteria. To better

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f2471be0a44b5deeba0ecbbfe53671d1
https://hdl.handle.net/11370/3c2a1d6d-557f-4e56-bca2-d90975102ab5

Establishing genetic manipulation for novel strains of human gut bacteria

Autor: Paul O Sheridan, Ma’en Al Odat, Karen P. Scott

Publikováno v: Microbiome Research Reports. 2:1

Recent years have seen the development of high-accuracy and high-throughput genetic manipulation techniques, which have greatly improved our understanding of genetically tractable microbes. However, challenges remain in establishing genetic manipulat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::9cb44f16608cadf6f3c19b79cb45d1a9
https://doi.org/10.20517/mrr.2022.13