JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

Autor: Aziz Khan, Damir Baranasic, Benoit Ballester, Ieva Rauluseviciute, Fayrouz Hammal, Klaas Vandepoele, Paul Boddie, Anthony Mathelier, Daniel Schmelter, Rafael Riudavets-Puig, Wyeth W. Wasserman, Jérémy Lucas, François Parcy, Oriol Fornes, Boris Lenhard, Laura Turchi, Romain Blanc-Mathieu, Jaime A. Castro-Mondragon, Albin Sandelin, Nicolás Manosalva Pérez, Roza Berhanu Lemma, Tiffany Y. Leung, Alejandro Aguirre

Publikováno v: Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2021, ⟨10.1093/nar/gkab1113⟩
NUCLEIC ACIDS RESEARCH
Nucleic Acids Research, 2022, 50 (D1), pp.D165-D173. ⟨10.1093/nar/gkab1113⟩
Castro-Mondragon, J A, Riudavets-Puig, R, Rauluseviciute, I, Lemma, R B, Turchi, L, Blanc-Mathieu, R, Lucas, J, Boddie, P, Khan, A, Perez, N M, Fornes, O, Leung, T Y, Aguirre, A, Hammal, F, Schmelter, D, Baranasic, D, Ballester, B, Sandelin, A, Lenhard, B, Vandepoele, K, Wasserman, W W, Parcy, F & Mathelier, A 2022, ' JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles ', Nucleic acids symposium series, vol. 50, no. D1, pp. D165-D173 . https://doi.org/10.1093/nar/gkab1113

JASPAR (http://jaspar.genereg.net/) is an open-access database containing manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic groups. In this 9th release, we expanded the CORE collection with 341 ne

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5d158f1948375c5777d9f52d837aac17
https://hal.archives-ouvertes.fr/hal-03463821/file/Jaspar_2022.pdf

UniBind: maps of high-confidence direct TF-DNA interactions across nine species

Autor: Aziz Khan, Rafael Riudavets Puig, Jaime A. Castro-Mondragon, Paul Boddie, Anthony Mathelier

Publikováno v: BMC Genomics, Vol 22, Iss 1, Pp 1-17 (2021)
BMC Genomics

Background Transcription factors (TFs) bind specifically to TF binding sites (TFBSs) at cis-regulatory regions to control transcription. It is critical to locate these TF-DNA interactions to understand transcriptional regulation. Efforts to predict b

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0f2e3a08aa15bc66ada9ec3e65c22a99
http://hdl.handle.net/10852/86500

iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex

Autor: Katerina Michalickova, Sabry Razick, Paul Boddie, Antonio M. Mora, Ian Donaldson

Publikováno v: BMC Bioinformatics
BMC Bioinformatics, Vol 12, Iss 1, p 388 (2011)

Background The iRefIndex consolidates protein interaction data from ten databases in a rigorous manner using sequence-based hash keys. Working with consolidated interaction data comes with distinct challenges: data are redundant, overlapping, highly

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4df4a27de9853cd52167924a6bbf5af2
https://pubmed.ncbi.nlm.nih.gov/21975162

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.

Autor: Castro-Mondragon, Jaime A, Riudavets-Puig, Rafael, Rauluseviciute, Ieva, Berhanu Lemma, Roza, Turchi, Laura, Blanc-Mathieu, Romain, Lucas, Jeremy, Boddie, Paul, Khan, Aziz, Manosalva Pérez, Nicolás, Fornes, Oriol, Leung, Tiffany Y, Aguirre, Alejandro, Hammal, Fayrouz, Schmelter, Daniel, Baranasic, Damir, Ballester, Benoit, Sandelin, Albin, Lenhard, Boris, Vandepoele, Klaas

Publikováno v: Nucleic Acids Research; 1/7/2022, Vol. 50 Issue D1, pD165-D173, 9p

The Body in Sound, Music and Performance : Studies in Audio and Sonic Arts

Autor: Linda O Keeffe, Isabel Nogueira

The Body in Sound, Music and Performance brings together cutting-edge contributions from women working on and researching contemporary sound practice. This highly interdisciplinary book features a host of international contributors and places emphasi