Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Paul Bastide"'
Autor:
Simon Dellicour, Sebastian Lequime, Bram Vrancken, Mandev S. Gill, Paul Bastide, Karthik Gangavarapu, Nathaniel L. Matteson, Yi Tan, Louis du Plessis, Alexander A. Fisher, Martha I. Nelson, Marius Gilbert, Marc A. Suchard, Kristian G. Andersen, Nathan D. Grubaugh, Oliver G. Pybus, Philippe Lemey
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)
Classical epidemiological approaches have been limited in their ability to formally test hypotheses. Here, Dellicour et al. illustrate how phylodynamic and phylogeographic analyses can be leveraged for hypothesis testing in molecular epidemiology usi
Externí odkaz:
https://doaj.org/article/034b011214474575a5f47f436fad92f5
Autor:
Paul Bastide, Gilles Didier
Phylogenetic comparative methods use random processes, such as the Brownian Motion, to model the evolution of continuous traits on phylogenetic trees. Growing evidence for non-gradual evolution motivated the development of complex models, often based
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ff2db7a8101144041266c10ecb2274dd
https://doi.org/10.1101/2023.04.05.535685
https://doi.org/10.1101/2023.04.05.535685
Autor:
Mélina Gallopin, Christine Drevet, Vanesa S. Garcia de la Torre, Sarah Jelassi, Marie Michel, Claire Ducos, Cédric Saule, Clarisse Majorel, Valérie Burtet-Sarramegna, Yohan Pillon, Paul Bastide, Olivier Lespinet, Sylvain Merlot
The remarkable capacity of plants to tolerate and accumulate tremendous amount of nickel is a complex adaptative trait that appeared independently in more than 700 species distributed in about fifty families. Nickel hyperaccumulation is thus proposed
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::67206e1c1a6af24b6503d86285fece6e
https://hal.science/hal-03835818
https://hal.science/hal-03835818
On s'intéresse ici à la probabilité de passer d'un état A à un état B mais dans le cas où le caractère d'intérêt est un trait quantitatif comme la taille ou le poids. Les modèles utilisés diffèrent du cas discrets et dérivent principale
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d6c66916b7b6ad943c807f0759f513b1
https://doi.org/10.51926/iste.9069.ch3
https://doi.org/10.51926/iste.9069.ch3
Within-species trait variation may be the result of genetic variation, environmental variation or measurement error for example. In phylogenetic comparative studies, failing to account for within-species variation has many adverse effects, such as in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::bfcb21d9395b1d29b35dd5fc9175eb76
https://doi.org/10.1101/2022.05.12.490814
https://doi.org/10.1101/2022.05.12.490814
Publikováno v:
Molecular Biology and Evolution
Molecular Biology and Evolution, 2023, 40 (1), ⟨10.1093/molbev/msac269⟩
Molecular Biology and Evolution, 2023, 40 (1), ⟨10.1093/molbev/msac269⟩
Interspecies RNA-Seq datasets are increasingly common, and have the potential to answer new questions about the evolution of gene expression. Single-species differential expression analysis is now a well-studied problem that benefits from sound stati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45ef0cf9250a4e9bd2caabd900904b1b
https://pubmed.ncbi.nlm.nih.gov/36508357
https://pubmed.ncbi.nlm.nih.gov/36508357
Publikováno v:
SODA 2021-ACM-SIAM Symposium on Discrete Algorithms
SODA 2021-ACM-SIAM Symposium on Discrete Algorithms, Jan 2021, Alexandria, VA, United States. pp.1-27, ⟨10.1137/1.9781611976465.129⟩
SODA
SODA 2021-ACM-SIAM Symposium on Discrete Algorithms, Jan 2021, Alexandria, VA, United States. pp.1-27, ⟨10.1137/1.9781611976465.129⟩
SODA
Full version; International audience; We study the fundamental problem of distributed clock synchronization in a basic probabilistic communication setting.We consider a synchronous fully-connected network of $n$ agents, where each agent has a local c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dbdba564238351eca5bff73eb5f25617
https://inria.hal.science/hal-02987598/document
https://inria.hal.science/hal-02987598/document
Publikováno v:
Systematic Biology
Systematic Biology, Oxford University Press (OUP), 2020, ⟨10.1093/sysbio/syaa037⟩
Systematic biology, vol 70, iss 1
Systematic Biology, Oxford University Press (OUP), 2020, ⟨10.1093/sysbio/syaa037⟩
Systematic biology, vol 70, iss 1
Markov models of character substitution on phylogenies form the foundation of phylogenetic inference frameworks. Early models made the simplifying assumption that the substitution process is homogeneous over time and across sites in the molecular seq
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::27116b17582a26046fabc795fdc12593
https://hal.archives-ouvertes.fr/hal-02988204
https://hal.archives-ouvertes.fr/hal-02988204
Publikováno v:
Methods in Ecology and Evolution
Methods in ecology and evolution, 11 (8
Methods in Ecology and Evolution, Wiley, 2020, 11 (8), pp.1002-1007. ⟨10.1111/2041-210X.13422⟩
Methods in ecology and evolution, 11(8), 1002-1007. Wiley
Methods in ecology and evolution, 11 (8
Methods in Ecology and Evolution, Wiley, 2020, 11 (8), pp.1002-1007. ⟨10.1111/2041-210X.13422⟩
Methods in ecology and evolution, 11(8), 1002-1007. Wiley
The transmission process of an infectious agent creates a connected chain of hosts linked by transmission events, known as a transmission chain. Reconstructing transmission chains remains a challenging endeavour, except in rare cases characterized by
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45fab20199767e835011cc852713c13f
https://doi.org/10.1101/2020.03.03.973107
https://doi.org/10.1101/2020.03.03.973107
Autor:
Bram Vrancken, Alexander A. Fisher, Simon Dellicour, Sebastian Lequime, Louis du Plessis, Karthik Gangavarapu, Kristian G. Andersen, Mandev S. Gill, Nathan D. Grubaugh, Marius Gilbert, Paul Bastide, Oliver G. Pybus, Philippe Lemey, Marc A. Suchard, Nathaniel L. Matteson, Yi Tan, Martha I. Nelson
Publikováno v:
Nature Communications
Nature communications, vol 11, iss 1
Nature Communications, Nature Publishing Group, 2020, 11 (1), ⟨10.1038/s41467-020-19122-z⟩
Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)
Nature communications, 11 (1
Nature Communications, 11
Nature communications, vol 11, iss 1
Nature Communications, Nature Publishing Group, 2020, 11 (1), ⟨10.1038/s41467-020-19122-z⟩
Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)
Nature communications, 11 (1
Nature Communications, 11
Computational analyses of pathogen genomes are increasingly used to unravel the dispersal history and transmission dynamics of epidemics. Here, we show how to go beyond historical reconstructions and use spatially-explicit phylogeographic and phylody
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c4d139ff01b047a9941ba2ed152265f0