Zobrazeno 1 - 4
of 4
pro vyhledávání: '"Patrick Phaneuf"'
Autor:
Jonathan Josephs-Spaulding, Akanksha Rajput, Ying Hefner, Richard Szubin, Archana Balasubramanian, Gaoyuan Li, Daniel C. Zielinski, Leonie Jahn, Morten Sommer, Patrick Phaneuf, Bernhard O. Palsson
Publikováno v:
mSystems, Vol 9, Iss 3 (2024)
ABSTRACTLimosilactobacillus reuteri, a probiotic microbe instrumental to human health and sustainable food production, adapts to diverse environmental shifts via dynamic gene expression. We applied the independent component analysis (ICA) to 117 RNA-
Externí odkaz:
https://doaj.org/article/0c560a62b2a84aecbbd7f328d4ed4532
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, vol 120, iss 15
Catoiu, E A, Phaneuf, P, Monk, J & Palsson, B O 2023, ' Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks ', Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 15, e2218835120 . https://doi.org/10.1073/pnas.2218835120
Catoiu, E A, Phaneuf, P, Monk, J & Palsson, B O 2023, ' Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks ', Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 15, e2218835120 . https://doi.org/10.1073/pnas.2218835120
The genomic diversity across strains of a species forms the genetic basis for differences in their behavior. A large-scale assessment of sequence variation has been made possible by the growing availability of strain-specific whole-genome sequences (
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::831fc77124fb4df6866b187291fbadac
https://doi.org/10.1073/pnas.2218835120
https://doi.org/10.1073/pnas.2218835120
Inexpensive DNA sequencing has led to a rapidly increasing number of whole genome sequences in the public domain. Natural sequence variation can now be assessed across a large number of sequenced strains of a bacterial species, resulting in the defin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8d8fbe5b4849179a74d5127f3ebed7c4
https://doi.org/10.1101/2022.04.04.487056
https://doi.org/10.1101/2022.04.04.487056
Autor:
Laurence Yang, Nathan Mih, Amitesh Anand, Joon Ho Park, Justin Tan, James T. Yurkovich, Jonathan M. Monk, Colton J. Lloyd, Troy E. Sandberg, Sang Woo Seo, Donghyuk Kim, Anand V. Sastry, Patrick Phaneuf, Ye Gao, Jared T. Broddrick, Ke Chen, David Heckmann, Richard Szubin, Ying Hefner, Adam M. Feist, Bernhard O. Palsson
All aerobically growing microbes must deal with oxidative stress from intrinsically-generated reactive oxygen species (ROS), or from external ROS in the context of infection. To study the systems biology of microbial ROS response, we developed a geno
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::31259a2386aba404d736988b86666068
https://doi.org/10.1101/227892
https://doi.org/10.1101/227892