Zobrazeno 1 - 10
of 21
pro vyhledávání: '"Pat J. Unkefer"'
Publikováno v:
PLoS Computational Biology, Vol 6, Iss 11, p e1001007 (2010)
An important step in understanding gene regulation is to identify the DNA binding sites recognized by each transcription factor (TF). Conventional approaches to prediction of TF binding sites involve the definition of consensus sequences or position-
Externí odkaz:
https://doaj.org/article/9127d94b162446ecab68d39de9bf9c8a
Autor:
Richard T. Sayre, Matteo Pellegrini, José A. Olivares, Ian K. Blaby, Jan G. Jaworski, Timothy P. Devarenne, Daniel B. Anderson, Shawn R. Starkenburg, James W. Richardson, Judith K. Brown, Martin Sabarsky, Clifford J. Unkefer, Jon K. Magnuson, Jonathan E. Holladay, István Molnár, Pat J. Unkefer, Taraka Dale, C. Meghan Downes, Ellen A. Panisko, John B. Mott, Ivan Baxter, Ursula Goodenough, Margaret McCormick, David T. Fox, Kimberly L. Ogden, Michael Carleton, Scott N. Twary, Andrew T. Koppisch, Gary D. Stormo, Susan K. Dutcher, David Kramer, Munehiro Teshima, Mary S. Lipton, Rose Ann Cattolico, Joshua S. Yuan, Babetta L. Marrone, Juergen E. W. Polle
Publikováno v:
Unkefer, C J, Sayre, R T, Magnuson, J K, Anderson, D B, Baxter, I, Blaby, I K, Brown, J K, Carleton, M, Cattolico, R A, Dale, T, Devarenne, T P, Downes, C M, Dutcher, S K, Fox, D T, Goodenough, U, Jaworski, J, Holladay, J E, Kramer, D M, Koppisch, A T, Lipton, M S, Marrone, B L, McCormick, M, Molnár, I, Mott, J B, Ogden, K L, Panisko, E A, Pellegrini, M, Polle, J, Richardson, J W, Sabarsky, M, Starkenburg, S R, Stormo, G D, Teshima, M, Twary, S N, Unkefer, P J, Yuan, J S & Olivares, J A 2017, ' Review of the algal biology program within the National Alliance for Advanced Biofuels and Bioproducts ', Algal Research, vol. 22, pp. 187-215 . https://doi.org/10.1016/j.algal.2016.06.002
In 2010, when the National Alliance for Advanced Biofuels and Bioproducts (NAABB) consortium began, little was known about the molecular basis of algal biomass or oil production. Very few algal genome sequences were available and efforts to identify
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4d4c81271409c53605ec01cf26f1e535
https://escholarship.org/uc/item/9wf7q7md
https://escholarship.org/uc/item/9wf7q7md
Autor:
Elizabeth Hong-Geller, Pat J. Unkefer, Yolanda E. Valdez, Tinh T. Nguyen, Kristy L. Nowak-Lovato, Andrew Bradbury, Tuhin S. Maity, John Dunbar, Devin W. Close, Ricardo Marti-Arbona
Publikováno v:
Microbiology. 158:571-582
Determining transcription factor (TF) recognition motifs or operator sites is central to understanding gene regulation, yet few operators have been characterized. In this study, we used a protein-binding microarray (PBM) to discover the DNA recogniti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4f64d9984d5cf92e41a1749e74d3a4be
https://doi.org/10.1099/mic.0.055129-0
https://doi.org/10.1099/mic.0.055129-0
Publikováno v:
Bioinformatics. 22:3082-3088
Motivation: Our knowledge of metabolism is far from complete, and the gaps in our knowledge are being revealed by metabolomic detection of small-molecules not previously known to exist in cells. An important challenge is to determine the reactions in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::40010b235bfd5f7d049fd02458061ed0
https://doi.org/10.1093/bioinformatics/btl535
https://doi.org/10.1093/bioinformatics/btl535
Autor:
Pat J. Unkefer, Delbert Gaitlan, Ken Reardon, David Sams, Karl Albrecht, Zivko L. Nikolov, Ryan Davis, Liu Wei, Michael Carleton, Michael H. Huesemann, Tzachi M. Samocha, Gary D. Stormo, Rose Anne Cattolico, David Shonnard, Shanna Lodge-Ivey, Brian L. Goodall, Ivan Baxter, Philip T. Pienkos, Nirmala Khandan, Tanner Schaub, Steven Lupton, Judith K. Brown, Shawn Archibeque, Sharry Lynch, Tyron Wickersham, Wiebke J. Boeing, Edward D. Frank, C. Meghan Downes, David Kramer, Paul Laur, David T. Fox, Sandun Fernando, Margaret McCormick, Adrian Unc, Sergio C. Capareda, Alex Thomasson, Mary S. Lipton, Sabeeha S. Merchant, Ellen A. Panisko, Bob Arnold, James Oyler, Jan G. Jaworski, Richard T. Sayre, Ursula Goodenough, Pete Waller, Shawn R. Starkenburg, Paul Blowers, Richard Skaggs, Timothy P. Devarenne, Susan K. Dutcher, Clifford J. Unkefer, Shuguang Deng, Matteo Pellegrini, Peter J. Lammers, Deborah Newby, Douglas Elliott, Xuemei Bai, Richard Hallen, Dale Taraka, Ronald E. Lacey, James S. Bonner, Kimberly L. Ogden, Ronald L. Parsons, István Molnár, Joshua S. Yuan, Juergen E. W. Polle, Ninad Gujarathi, Lois Brown, James Foster, Jim Coons, Addison Lawrence, Jennifer A. Nieweg, Martin Sabarsky, John C. Detter, Babs Marrone, Kiran Kadam, Scott Cheny, William Roberts, Robert Handler, James W. Richardson, José A. Olivares, Pete Silks, Anthony Marchese, Warren Seider, Scott N. Twary, Brian G. Trewyn, Granda Cesar, Eric Dunlop
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::56d2d8c1037320ce4185e96fffbcf883
https://doi.org/10.2172/1166710
https://doi.org/10.2172/1166710
Publikováno v:
Biotechnology and Bioengineering. 56:258-267
Biotransformation of RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine) in slurry reactors was studied to determine the importance of supplementation of known biodegraders and the type of nutrient source required. Although addition of bacteria to the syst
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::82e2093f07835c09506d5f1eaa6686d3
https://doi.org/10.1002/(sici)1097-0290(19971105)56:3<258::aid-bit3>3.0.co
https://doi.org/10.1002/(sici)1097-0290(19971105)56:3<258::aid-bit3>3.0.co
Publikováno v:
Journal of Molecular Biology Research. 3
The search for effectors of novel transcriptional regulators is a challenging task. Here, we present the prediction and validation of an effector for a novel transcriptional regulator (TR). The clustering of genes around the gene coding for Bxe_A0425
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8557e47d195d5e32b485da278e8fe9e6
https://doi.org/10.5539/jmbr.v3n1p91
https://doi.org/10.5539/jmbr.v3n1p91
Autor:
Clifford J. Unkefer, John Dunbar, Richard S Hall, Ricardo Marti-Arbona, Tuhin S. Maity, Scott P. Hennelly, Pat J. Unkefer, Fangping Mu
Publikováno v:
Journal of Molecular Biology Research. 3
To study the transcriptional regulation of oxidative tryptophan degradation in Burkholderia , we used comparative genomics that focused on the operon containing the genes annotated as kynA , kynU and kynB . In all sequenced Beta-proteobacteria to-dat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d79cec4711489144e3d172274b2af1ff
https://doi.org/10.5539/jmbr.v3n1p55
https://doi.org/10.5539/jmbr.v3n1p55
Autor:
Pat J. Unkefer, Clifford J. Unkefer, Richard S Hall, Tuhin S. Maity, Tinh T. Nguyen, Ricardo Marti-Arbona, Yolanda E. Valdez, John Dunbar
Publikováno v:
Journal of Molecular Biology Research. 3
Transcriptional regulators (TRs) are an important and versatile group of proteins, yet very little progress has been achieved towards the discovery and annotation of their biological functions. We have characterized a previously unknown organic hydro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0c860db1330b7525dc7720278dd17a03
https://doi.org/10.5539/jmbr.v3n1p37
https://doi.org/10.5539/jmbr.v3n1p37
Publikováno v:
The FASEB Journal. 26
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::fc52db24a15ce6eac0561bb7da51ad66
https://doi.org/10.1096/fasebj.26.1_supplement.931.5
https://doi.org/10.1096/fasebj.26.1_supplement.931.5