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Challenges in LncRNA Biology: Views and Opinions.

Autor: Adjeroh DA; Lane Department of Computer Science and Electrical Engineering, West Virginia University (WVU), Morgantown, WV 26506, USA., Zhou X; Department of Bioinformatics and Systems Medicine, University of Texas Health Science Center, Houston, TX 77030, USA., Paschoal AR; Department of Computer Science, Bioinformatics and Pattern Recognition Group, Federal University of Technology-Paraná-UTFPR, Curitiba 86300-000, Brazil.; Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot OX11 0FA, UK., Dimitrova N; Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520, USA., Derevyanchuk EG; Department of Genetics, Southern Federal University, Rostov-on-Don 344090, Russia., Shkurat TP; Department of Genetics, Southern Federal University, Rostov-on-Don 344090, Russia., Loeb JA; Department of Neurology and Rehabilitation, The Center for Clinical and Translational Science, The University of Illinois NeuroRepository, University of Illinois, Chicago, IL 60607, USA., Martinez I; Department of Microbiology, Immunology & Cell Biology, WVU Cancer Institute, West Virginia University (WVU) School of Medicine, Morgantown, WV 26505, USA., Lipovich L; Shenzhen Huayuan Biological Science Research Institute, Shenzhen Huayuan Biotechnology Co., Ltd., Shenzhen 518000, China.; Center for Molecular Medicine and Genetics, School of Medicine, Wayne State University, Detroit, MI 48201, USA.; College of Science, Mathematics and Technology, Wenzhou-Kean University, Wenzhou 325060, China.

Publikováno v: Non-coding RNA [Noncoding RNA] 2024 Aug 01; Vol. 10 (4). Date of Electronic Publication: 2024 Aug 01.

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars.

Autor: Salojärvi J; School of Biological Sciences, Nanyang Technological University, Singapore, Singapore. jarkko@ntu.edu.sg.; Organismal and Evolutionary Biology Research Programme, University of Helsinki, Helsinki, Finland. jarkko@ntu.edu.sg.; Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, Singapore. jarkko@ntu.edu.sg., Rambani A; Boyce Thompson Institute, Cornell University, Ithaca, NY, USA., Yu Z; Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada., Guyot R; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France.; Department of Electronics and Automation, Universidad Autónoma de Manizales, Manizales, Colombia., Strickler S; Boyce Thompson Institute, Cornell University, Ithaca, NY, USA., Lepelley M; Société des Produits Nestlé SA, Nestlé Research, Tours, France., Wang C; Organismal and Evolutionary Biology Research Programme, University of Helsinki, Helsinki, Finland., Rajaraman S; Organismal and Evolutionary Biology Research Programme, University of Helsinki, Helsinki, Finland., Rastas P; Institute of Biotechnology, University of Helsinki, Helsinki, Finland., Zheng C; Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada., Muñoz DS; Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada., Meidanis J; Institute of Computing, University of Campinas, Campinas, Brazil., Paschoal AR; Department of Computer Science, The Federal University of Technology - Paraná (UTFPR), Cornélio Procópio, Brazil., Bawin Y; Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Melle, Belgium., Krabbenhoft TJ; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Wang ZQ; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Fleck SJ; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Aussel R; Société des Produits Nestlé SA, Nestlé Research, Tours, France.; Centre d'Immunologie de Marseille-Luminy, Aix Marseille Université, Marseille, France., Bellanger L; Société des Produits Nestlé SA, Nestlé Research, Tours, France., Charpagne A; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Fournier C; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Kassam M; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Lefebvre G; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Métairon S; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Moine D; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Rigoreau M; Société des Produits Nestlé SA, Nestlé Research, Tours, France., Stolte J; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Hamon P; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France., Couturon E; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France., Tranchant-Dubreuil C; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France., Mukherjee M; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Lan T; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Engelhardt J; Department of Computer Science, University of Leipzig, Leipzig, Germany., Stadler P; Department of Computer Science, University of Leipzig, Leipzig, Germany.; Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany., Correia De Lemos SM; Group of Genomics and Transcriptomes in Plants, São Paulo State University, UNESP, Rio Claro, Brazil., Suzuki SI; Centro de Ciências Agrárias, Universidade Estadual de Londrina, Londrina, Brazil., Sumirat U; Indonesian Coffee and Cocoa Research Institute (ICCRI), Jember, Indonesia., Wai CM; University of Illinois at Urbana-Champaign, Urbana, IL, USA., Dauchot N; Research Unit in Plant Cellular and Molecular Biology, University of Namur, Namur, Belgium., Orozco-Arias S; Department of Electronics and Automation, Universidad Autónoma de Manizales, Manizales, Colombia., Garavito A; Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Manizales, Colombia., Kiwuka C; National Agricultural Research Organization (NARO), Entebbe, Uganda., Musoli P; National Agricultural Research Organization (NARO), Entebbe, Uganda., Nalukenge A; National Agricultural Research Organization (NARO), Entebbe, Uganda., Guichoux E; Biodiversité Gènes & Communautés, INRA, Bordeaux, France., Reinout H; Hortus Botanicus Amsterdam, Amsterdam, the Netherlands., Smit M; Hortus Botanicus Amsterdam, Amsterdam, the Netherlands., Carretero-Paulet L; Departamento de Biología y Geología, Universidad de Almería, Almería, Spain., Filho OG; Instituto Agronômico (IAC) Centro de Café 'Alcides Carvalho', Fazenda Santa Elisa, Campinas, Brazil., Braghini MT; Instituto Agronômico (IAC) Centro de Café 'Alcides Carvalho', Fazenda Santa Elisa, Campinas, Brazil., Padilha L; Embrapa Café/Instituto Agronômico (IAC) Centro de Café 'Alcides Carvalho', Fazenda Santa Elisa, Campinas, Brazil., Sera GH; Instituto de Desenvolvimento Rural do Paraná- IAPAR, Londrina, Brazil., Ruttink T; Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Melle, Belgium.; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium., Henry R; Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, Queensland, Australia., Marraccini P; CIRAD - UMR DIADE (IRD-CIRAD-Université de Montpellier) BP 64501, Montpellier, France., Van de Peer Y; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa.; College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, China.; Center for Plant Systems Biology, VIB, Ghent, Belgium., Andrade A; Embrapa Café/Inovacafé Laboratory of Molecular Genetics Campus da UFLA-MG, Lavras, Brazil., Domingues D; Group of Genomics and Transcriptomes in Plants, São Paulo State University, UNESP, Rio Claro, Brazil., Giuliano G; Italian National Agency for New Technologies, Energy and Sustainable Economic Development, ENEA Casaccia Research Center, Rome, Italy., Mueller L; Boyce Thompson Institute, Cornell University, Ithaca, NY, USA., Pereira LF; Embrapa Café/Lab. Biotecnologia, Área de Melhoramento Genético, Londrina, Brazil., Plaisance S; VIB Nucleomics Core, Leuven, Belgium., Poncet V; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France., Rombauts S; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; Center for Plant Systems Biology, VIB, Ghent, Belgium., Sankoff D; Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada., Albert VA; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA. vaalbert@buffalo.edu., Crouzillat D; Société des Produits Nestlé SA, Nestlé Research, Tours, France. dcrouzillat@gmail.com., de Kochko A; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France. alexandre.dekochko@gmail.com., Descombes P; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland. patrick.descombes@rd.nestle.com.

Publikováno v: Nature genetics [Nat Genet] 2024 Apr; Vol. 56 (4), pp. 721-731. Date of Electronic Publication: 2024 Apr 15.

cirCodAn: A GHMM-based tool for accurate prediction of coding regions in circRNA.

Autor: Barbosa DF; Programa de Pós-Graduação Associado em Bioinformática (UFPR/UTFPR), Departamento Acadêmico de Computação (DACOM), Universidade Tecnológica Federal do Paraná (UTFPR), Cornélio Procópio, Paraná, Brazil; Instituto Federal de Educação, Ciência e Tecnologia de Santa Catarina (IFSC), Canoinhas, Santa Catarina, Brazil., Oliveira LS; Programa de Pós-Graduação Associado em Bioinformática (UFPR/UTFPR), Departamento Acadêmico de Computação (DACOM), Universidade Tecnológica Federal do Paraná (UTFPR), Cornélio Procópio, Paraná, Brazil., Nachtigall PG; Laboratório de Toxinologia Aplicada, CeTICS, Instituto Butantan, São Paulo, SP, Brazil; Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Oslo, Norway., Valentini Junior R; Programa de Pós-Graduação Associado em Bioinformática (UFPR/UTFPR), Departamento Acadêmico de Computação (DACOM), Universidade Tecnológica Federal do Paraná (UTFPR), Cornélio Procópio, Paraná, Brazil., de Souza N; Programa de Pós-Graduação Associado em Bioinformática (UFPR/UTFPR), Departamento Acadêmico de Computação (DACOM), Universidade Tecnológica Federal do Paraná (UTFPR), Cornélio Procópio, Paraná, Brazil., Paschoal AR; Programa de Pós-Graduação Associado em Bioinformática (UFPR/UTFPR), Departamento Acadêmico de Computação (DACOM), Universidade Tecnológica Federal do Paraná (UTFPR), Cornélio Procópio, Paraná, Brazil., Kashiwabara AY; Programa de Pós-Graduação Associado em Bioinformática (UFPR/UTFPR), Departamento Acadêmico de Computação (DACOM), Universidade Tecnológica Federal do Paraná (UTFPR), Cornélio Procópio, Paraná, Brazil. Electronic address: kashiwabara@utfpr.edu.br.

Publikováno v: Advances in protein chemistry and structural biology [Adv Protein Chem Struct Biol] 2024; Vol. 139, pp. 289-334. Date of Electronic Publication: 2024 Feb 17.

Zoledronate treatment exerts sex-independent effects on bone and dental physicochemical properties in mice jaw necrosis.

Autor: Lima-Verde MEQ; Faculty of Pharmacy, Dentistry and Nursing, Postgraduate Program in Dentistry, Federal University of Ceará (UFC), Rua Monsenhor Furtado, S/N, Rodolfo Teofilo, Fortaleza, CE, Brazil. elisalimaverde@gmail.com., de Queiroz Rodrigues MI; Faculty of Pharmacy, Dentistry and Nursing, Postgraduate Program in Dentistry, Federal University of Ceará (UFC), Rua Monsenhor Furtado, S/N, Rodolfo Teofilo, Fortaleza, CE, Brazil., Vieira BR; Health Sciences Center, Graduate Program in Dentistry, Federal University of Paraíba, Joao Pessoa, PB, Brazil., Lima-Verde Neto FTG; Aeronautical and Aerospace Engineering Division, Technological Institute of Aeronautics (ITA), São José Dos Campos, SP, Brazil., Agressott EVH; Department of Physics, Science Center, Federal University of Ceará, Fortaleza, CE, Brazil., de Sousa FB; Department of Morphology, Health Sciences Center, Federal University of Paraíba, Joao Pessoa, PB, Brazil., Paschoal AR; Department of Physics, Science Center, Federal University of Ceará, Fortaleza, CE, Brazil., de Barros Silva PG; Faculty of Pharmacy, Dentistry and Nursing, Postgraduate Program in Dentistry, Federal University of Ceará (UFC), Rua Monsenhor Furtado, S/N, Rodolfo Teofilo, Fortaleza, CE, Brazil., Sousa FB; Faculty of Pharmacy, Dentistry and Nursing, Postgraduate Program in Dentistry, Federal University of Ceará (UFC), Rua Monsenhor Furtado, S/N, Rodolfo Teofilo, Fortaleza, CE, Brazil., Mota MRL; Faculty of Pharmacy, Dentistry and Nursing, Postgraduate Program in Dentistry, Federal University of Ceará (UFC), Rua Monsenhor Furtado, S/N, Rodolfo Teofilo, Fortaleza, CE, Brazil., Alves APNN; Faculty of Pharmacy, Dentistry and Nursing, Postgraduate Program in Dentistry, Federal University of Ceará (UFC), Rua Monsenhor Furtado, S/N, Rodolfo Teofilo, Fortaleza, CE, Brazil.

Publikováno v: Journal of bone and mineral metabolism [J Bone Miner Metab] 2023 Nov; Vol. 41 (6), pp. 760-771. Date of Electronic Publication: 2023 Sep 07.