Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Panisak Boonamnaj"'
Publikováno v:
AIMS Biophysics, Vol 9, Iss 4, Pp 330-340 (2022)
Thermal response of an envelope protein conformation from coronavirus-2 (CoVE) is studied by a coarse-grained Monte Carlo simulation. Three distinct segments, the N-terminal, Trans-membrane, and C-terminal are verified from its specific contact profi
Externí odkaz:
https://doaj.org/article/aad1521b5538426ab4e9d0cea14b2d13
Publikováno v:
AIP Advances, Vol 12, Iss 10, Pp 105027-105027-6 (2022)
Large-scale Monte Carlo simulations are performed to investigate local and global thermodynamic properties of the main protease in SARS (MP1) and COVID-19 (MP2) coronaviruses using a bond-fluctuating coarse-grained protein model for a range of temper
Externí odkaz:
https://doaj.org/article/45539f03a5c64f23b9c13bf68c76b8e1
Globular bundles and entangled network of proteins (CorA) by a coarse-grained Monte Carlo simulation
Publikováno v:
AIMS Biophysics, Vol 6, Iss 2, Pp 68-82 (2019)
Using a coarse-grained model, self-organized assembly of proteins (e.g., CorA and its inner segment iCorA) is studied by examining quantities such as contact profile, radius of gyration, and structure factor as a function of protein concentration at
Externí odkaz:
https://doaj.org/article/0776cf4c202745aba3d6a5555042b5f8
Publikováno v:
Biophysical chemistry. 287
The viral main protease (M
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3f16e23fcfe2342b560a8a0ea97abdcc
https://pubmed.ncbi.nlm.nih.gov/35635893
https://pubmed.ncbi.nlm.nih.gov/35635893
Publikováno v:
AIP Advances. 12:105027
Large-scale Monte Carlo simulations are performed to investigate local and global thermodynamic properties of the main protease in SARS (MP1) and COVID-19 (MP2) coronaviruses using a bond-fluctuating coarse-grained protein model for a range of temper
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f69b133cec2336dda8fc16ac6e443c54
https://doi.org/10.1063/5.0109357
https://doi.org/10.1063/5.0109357
Publikováno v:
The Journal of Physical Chemistry B. 123:2864-2873
Voltage-gated proton-selective channels (Hv1) mediate proton extrusion during intracellular acidification. Hv1 is gated by the proton electrochemical gradient. Intracellular ionizable residues in Hv1 have been proposed to serve as proton-binding site
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6aea74f59cbbdd597c97a6ad7b503d1d
https://doi.org/10.1021/acs.jpcb.9b00634
https://doi.org/10.1021/acs.jpcb.9b00634
Globular bundles and entangled network of proteins (CorA) by a coarse-grained Monte Carlo simulation
Autor:
Ras B. Pandey, Pornthep Sompornpisut, Sunan Kitjaruwankul, Warin Rangubpit, Panisak Boonamnaj
Publikováno v:
AIMS Biophysics, Vol 6, Iss 2, Pp 68-82 (2019)
Using a coarse-grained model, self-organized assembly of proteins (e.g. CorA and its inner segment iCorA) is studied by examining quantities such as contact profile, radius of gyration, and structure factor as a function of protein concentration at a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45a815df77611b80cc59c2e1757ed547
https://doi.org/10.3934/biophy.2019.2.68
https://doi.org/10.3934/biophy.2019.2.68
Publikováno v:
Biophysical chemistry. 277
Voltage sensor domain (VSD) in channel and non-channel membrane proteins shares a common function in the detection of changes in the transmembrane electric potential. The VSD is made of four helical transmembrane segments (S1-S4) that form a structur
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1d370e460cc9e24347dd35f34f4b2e15
https://pubmed.ncbi.nlm.nih.gov/34147849
https://pubmed.ncbi.nlm.nih.gov/34147849
Autor:
Pornthep Sompornpisut, Sunita Subedi Paudel, Ras B. Pandey, Sunan Kitjaruwankul, Panisak Boonamnaj, Warin Jetsadawisut
Publikováno v:
Physica A: Statistical Mechanics and its Applications. 506:987-992
Thermal response of the inner (iCorA) and outer (oCorA) segments of a transmembrane protein CorA is investigated by a large-scale coarse-grained Monte Carlo simulation in native phase. We find that the conformation of iCorA contracts on raising the t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5dcb505244fafbe37c7fb69a2c318020
https://doi.org/10.1016/j.physa.2018.05.014
https://doi.org/10.1016/j.physa.2018.05.014