Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

Autor: Robert Riley, Martin Engelhard Kogle, Jakob Blæsbjerg Hoof, Kerrie Barry, Kimchi Strasser, Ronald P. de Vries, Kurt LaButti, Jon K. Magnuson, Alicia Clum, Pallavi A. Phatale, Tammi Camilla Vesth, Matt Nolan, Ad Wiebenga, John M. Gladden, Scott E. Baker, Sebastian Theobald, Jens Christian Frisvad, Blake A. Simmons, Kristian Fog Nielsen, Miia R. Mäkelä, Sajeet Haridas, Laura Sandor, Ellen Kirstine Lyhne, Asaf Salamov, Mikael Rørdam Andersen, Igor V. Grigoriev, Matthieu Hainaut, Thomas Ostenfeld Larsen, Elodie Drula, Jane L. Nybo, Cindy Chen, Julian Brandl, Anna Lipzen, Bernard Henrissat, Uffe Hasbro Mortensen, Erin McDonnell, Alan Kuo, Morten Thrane Nielsen, Adrian Tsang

Publikováno v: Nature Genetics
Nature Genetics, Nature Publishing Group, 2018, 50 (12), pp.1688-1695. ⟨10.1038/s41588-018-0246-1⟩
Nature Genetics, 50(12), 1688-+. Nature Publishing Group
Nature Genetics, 2018, 50 (12), pp.1688-1695. ⟨10.1038/s41588-018-0246-1⟩
Nature genetics, vol 50, iss 12
Vesth, TC; Nybo, JL; Theobald, S; Frisvad, JC; Larsen, TO; Nielsen, KF; et al.(2018). Investigation of inter-and intraspecies variation through genome sequencing of Aspergillus section Nigri. Nature Genetics. doi: 10.1038/s41588-018-0246-1. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/37c6r9tq
Vesth, T C, Nybo, J L, Theobald, S, Frisvad, J C, Larsen, T O, Nielsen, K F, Hoof, J B, Brandl, J, Salamov, A, Riley, R, Gladden, J M, Phatale, P, Nielsen, M T, Lyhne, E K, Kogle, M E, Strasser, K, McDonnell, E, Barry, K, Clum, A, Chen, C, LaButti, K, Haridas, S, Nolan, M, Sandor, L, Kuo, A, Lipzen, A, Hainaut, M, Drula, E, Tsang, A, Magnuson, J K, Henrissat, B, Wiebenga, A, Simmons, B A, Mäkelä, M R, de Vries, R P, Grigoriev, I V, Mortensen, U H, Baker, S E & Andersen, M R 2018, ' Investigation of inter-and intraspecies variation through genome sequencing of Aspergillus section Nigri ', Nature Genetics, vol. 50, pp. 1688–1695 . https://doi.org/10.1038/s41588-018-0246-1
Nature Genetics, 50, 1688. Nature Publishing Group

© 2018, This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply. Aspergillus section Nigri comprises filamentous fungi relevant to biomedicine, bioenergy, health, and biotechnology. To le

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a11ff4506d0cc40cbfeb88507ec955b0
https://hal-amu.archives-ouvertes.fr/hal-02094492

Functional Analyses of Trichoderma reesei LAE1 Reveal Conserved and Contrasting Roles of This Regulator

Autor: Christian P. Kubicek, Pallavi A. Phatale, Razieh Karimi-Aghcheh, Bernhard Seiboth, Michael Freitag, Kristina M. Smith, Scott E. Baker, Markus Omann, Susanne Zeilinger, Jin Woo Bok, Nancy P. Keller, Catherine Rhee, Alexander Lichius

Publikováno v: G3: Genes|Genomes|Genetics

The putative methyltransferase LaeA is a global regulator that affects the expression of multiple secondary metabolite gene clusters in several fungi, and it can modify heterochromatin structure in Aspergillus nidulans. We have recently shown that th

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::11fbefdfd1fc7943603a12a4209f0d18
https://doi.org/10.1534/g3.112.005140

Dissecting the Functional Role of Polyketide Synthases in Dictyostelium discoideum

Autor: Ratna Ghosh, Rajesh S. Gokhale, Anuradha Gosain, Debasisa Mohanty, Jyoti Sharma, Pallavi A. Phatale, Shweta Saran, Arush Chhabra, Subodh Kumar Samrat

Publikováno v: Journal of Biological Chemistry. 283:11348-11354

Dictyostelium discoideum exhibits the largest repository of polyketide synthase (PKS) proteins of all known genomes. However, the functional relevance of these proteins in the biology of this organism remains largely obscure. On the basis of computat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::eeb54a77758f8948d01e3ce6cfb60a30
https://doi.org/10.1074/jbc.m709588200

The putative protein methyltransferase LAE1 controls cellulase gene expression in Trichoderma reesei

Autor: Kristina M. Smith, Scott E. Baker, Bernhard Seiboth, Dominik G. Sauer, Pallavi A. Phatale, Lukas Hartl, Christian P. Kubicek, Michael Freitag, Razieh Karimi, Rita Linke

Publikováno v: Molecular Microbiology

Summary Trichoderma reesei is an industrial producer of enzymes that degrade lignocellulosic polysaccharides to soluble monomers, which can be fermented to biofuels. Here we show that the expression of genes for lignocellulose degradation are control

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::097b27730d865e4f3a0d37cb7873f912
https://pubmed.ncbi.nlm.nih.gov/22554051

Dissecting the functional role of polyketide synthases in Dictyostelium discoideum: biosynthesis of the differentiation regulating factor 4-methyl-5-pentylbenzene-1,3-diol

Autor: Ratna, Ghosh, Arush, Chhabra, Pallavi A, Phatale, Subodh K, Samrat, Jyoti, Sharma, Anuradha, Gosain, Debasisa, Mohanty, Shweta, Saran, Rajesh S, Gokhale

Publikováno v: The Journal of biological chemistry. 283(17)

Dictyostelium discoideum exhibits the largest repository of polyketide synthase (PKS) proteins of all known genomes. However, the functional relevance of these proteins in the biology of this organism remains largely obscure. On the basis of computat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::f86cd02b7845ff83d5ad7546f01c77a7
https://pubmed.ncbi.nlm.nih.gov/18252726