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pro vyhledávání: '"Pacyna CN"'
Transposable elements are interspersed repeat sequences that make up much of the human genome. Conventional approaches to RNA-seq analysis often exclude these sequences, fail to optimally adjudicate read alignments, or align reads to interspersed rep
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a72102aa6e07a6998222464b188e33d1
Autor:
Pacyna CN; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK., Anandapadamanaban M; MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK., Loudon KW; Cambridge University Hospitals NHS Foundation Trust and NIHR Cambridge Biomedical Research Centre, Cambridge, CB2 0QQ, UK.; Molecular Immunity Unit, Department of Medicine, University of Cambridge, Cambridge, CB2 0QQ, UK., Hay IM; MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK., Perisic O; MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK., Li R; Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA., Byrne M; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK., Allen L; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK., Roberts K; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK., Hooks Y; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK., Warren AY; Cambridge University Hospitals NHS Foundation Trust and NIHR Cambridge Biomedical Research Centre, Cambridge, CB2 0QQ, UK., Stewart GD; Cambridge University Hospitals NHS Foundation Trust and NIHR Cambridge Biomedical Research Centre, Cambridge, CB2 0QQ, UK.; Department of Surgery, University of Cambridge, Cambridge, CB2 0QQ, UK., Clatworthy MR; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.; Cambridge University Hospitals NHS Foundation Trust and NIHR Cambridge Biomedical Research Centre, Cambridge, CB2 0QQ, UK.; Molecular Immunity Unit, Department of Medicine, University of Cambridge, Cambridge, CB2 0QQ, UK., Teichmann SA; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.; Department of Medicine, University of Cambridge, Cambridge, CB2 0QQ, UK.; Wellcome-MRC Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, University of Cambridge, Cambridge, CB2 0QQ, UK., Behjati S; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.; Cambridge University Hospitals NHS Foundation Trust and NIHR Cambridge Biomedical Research Centre, Cambridge, CB2 0QQ, UK.; Department of Paediatrics, University of Cambridge, Cambridge, CB2 0QQ, UK., Campbell PJ; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK., Williams RL; MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK. rlw@mrc-lmb.cam.ac.uk., Mitchell TJ; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK. tjm61@medschl.cam.ac.uk.; Cambridge University Hospitals NHS Foundation Trust and NIHR Cambridge Biomedical Research Centre, Cambridge, CB2 0QQ, UK. tjm61@medschl.cam.ac.uk.; Department of Surgery, University of Cambridge, Cambridge, CB2 0QQ, UK. tjm61@medschl.cam.ac.uk.
Publikováno v:
Oncogene [Oncogene] 2024 Oct; Vol. 43 (44), pp. 3268-3276. Date of Electronic Publication: 2024 Sep 13.
Autor:
Pacyna CN; Wellcome Sanger Institute, Hinxton, United Kingdom., Nangalia J; Wellcome Sanger Institute, Hinxton, United Kingdom.; Wellcome-MRC Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, Cambridge, United Kingdom.
Publikováno v:
Cancer discovery [Cancer Discov] 2024 Jun 03; Vol. 14 (6), pp. 900-902.
Autor:
Trinh MK; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Pacyna CN; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Kildisiute G; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Thevanesan C; University College London Great Ormond Street Institute of Child Health, London, UK., Piapi A; University College London Great Ormond Street Institute of Child Health, London, UK., Ambridge K; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Anderson ND; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Khabirova E; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Prigmore E; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Straathof K; University College London Great Ormond Street Institute of Child Health, London, UK., Behjati S; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK. sb31@sanger.ac.uk.; Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK. sb31@sanger.ac.uk.; Department of Paediatrics, University of Cambridge, Cambridge, UK. sb31@sanger.ac.uk., Young MD; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK. my4@sanger.ac.uk.
Publikováno v:
Communications biology [Commun Biol] 2022 Sep 07; Vol. 5 (1), pp. 884. Date of Electronic Publication: 2022 Sep 07.
Autor:
Kildisiute G; Wellcome Sanger Institute, CB10 1SA Hinxton, UK., Kholosy WM; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 CS Utrecht, Netherlands., Young MD; Wellcome Sanger Institute, CB10 1SA Hinxton, UK. my4@sanger.ac.uk k.straathof@ucl.ac.uk j.j.molenaar@prinsesmaximacentrum.nl sb31@sanger.ac.uk., Roberts K; Wellcome Sanger Institute, CB10 1SA Hinxton, UK., Elmentaite R; Wellcome Sanger Institute, CB10 1SA Hinxton, UK., van Hooff SR; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 CS Utrecht, Netherlands., Pacyna CN; Wellcome Sanger Institute, CB10 1SA Hinxton, UK., Khabirova E; Wellcome Sanger Institute, CB10 1SA Hinxton, UK., Piapi A; UCL Great Ormond Street Institute of Child Health, WC1N 1EH London, UK., Thevanesan C; UCL Great Ormond Street Institute of Child Health, WC1N 1EH London, UK., Bugallo-Blanco E; UCL Great Ormond Street Institute of Child Health, WC1N 1EH London, UK., Burke C; UCL Great Ormond Street Institute of Child Health, WC1N 1EH London, UK., Mamanova L; Wellcome Sanger Institute, CB10 1SA Hinxton, UK., Keller KM; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 CS Utrecht, Netherlands., Langenberg-Ververgaert KPS; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 CS Utrecht, Netherlands., Lijnzaad P; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 CS Utrecht, Netherlands., Margaritis T; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 CS Utrecht, Netherlands., Holstege FCP; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 CS Utrecht, Netherlands., Tas ML; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 CS Utrecht, Netherlands., Wijnen MHWA; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 CS Utrecht, Netherlands., van Noesel MM; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 CS Utrecht, Netherlands., Del Valle I; UCL Great Ormond Street Institute of Child Health, WC1N 1EH London, UK., Barone G; Great Ormond Street Hospital for Children (GOSH), NHS Foundation Trust, NIHR Great Ormond Street Hospital Biomedical Research Centre, WC1N 3JH London, UK., van der Linden R; Hubrecht Institute, KNAW, 3584 CT Utrecht, Netherlands., Duncan C; Great Ormond Street Hospital for Children (GOSH), NHS Foundation Trust, NIHR Great Ormond Street Hospital Biomedical Research Centre, WC1N 3JH London, UK., Anderson J; UCL Great Ormond Street Institute of Child Health, WC1N 1EH London, UK.; Great Ormond Street Hospital for Children (GOSH), NHS Foundation Trust, NIHR Great Ormond Street Hospital Biomedical Research Centre, WC1N 3JH London, UK., Achermann JC; UCL Great Ormond Street Institute of Child Health, WC1N 1EH London, UK., Haniffa M; Wellcome Sanger Institute, CB10 1SA Hinxton, UK.; Institute of Cellular Medicine, Newcastle University, NE2 4HH Newcastle upon Tyne, UK.; Department of Dermatology and NIHR Newcastle Biomedical Research Centre, Newcastle Hospitals, NHS Foundation Trust, NE2 4LP Newcastle upon Tyne, UK., Teichmann SA; Wellcome Sanger Institute, CB10 1SA Hinxton, UK., Rampling D; Great Ormond Street Hospital for Children (GOSH), NHS Foundation Trust, NIHR Great Ormond Street Hospital Biomedical Research Centre, WC1N 3JH London, UK., Sebire NJ; Great Ormond Street Hospital for Children (GOSH), NHS Foundation Trust, NIHR Great Ormond Street Hospital Biomedical Research Centre, WC1N 3JH London, UK., He X; MRC-WT Cambridge Stem Cell Institute, University of Cambridge, CB2 0QQ Cambridge, UK.; Department of Clinical Neurosciences, University of Cambridge, CB2 0QQ Cambridge, UK., de Krijger RR; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 CS Utrecht, Netherlands.; Department of Pathology, University Medical Center Utrecht, Heidelberglaan 100, 3584 CX Utrecht, Netherlands., Barker RA; MRC-WT Cambridge Stem Cell Institute, University of Cambridge, CB2 0QQ Cambridge, UK.; Department of Clinical Neurosciences, University of Cambridge, CB2 0QQ Cambridge, UK., Meyer KB; Wellcome Sanger Institute, CB10 1SA Hinxton, UK., Bayraktar O; Wellcome Sanger Institute, CB10 1SA Hinxton, UK., Straathof K; UCL Great Ormond Street Institute of Child Health, WC1N 1EH London, UK. my4@sanger.ac.uk k.straathof@ucl.ac.uk j.j.molenaar@prinsesmaximacentrum.nl sb31@sanger.ac.uk.; Great Ormond Street Hospital for Children (GOSH), NHS Foundation Trust, NIHR Great Ormond Street Hospital Biomedical Research Centre, WC1N 3JH London, UK., Molenaar JJ; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 CS Utrecht, Netherlands. my4@sanger.ac.uk k.straathof@ucl.ac.uk j.j.molenaar@prinsesmaximacentrum.nl sb31@sanger.ac.uk., Behjati S; Wellcome Sanger Institute, CB10 1SA Hinxton, UK. my4@sanger.ac.uk k.straathof@ucl.ac.uk j.j.molenaar@prinsesmaximacentrum.nl sb31@sanger.ac.uk.; Cambridge University Hospitals NHS Foundation Trust, CB2 0QQ Cambridge, UK.; Department of Paediatrics, University of Cambridge, CB2 0QQ Cambridge, UK.
Publikováno v:
Science advances [Sci Adv] 2021 Feb 05; Vol. 7 (6). Date of Electronic Publication: 2021 Feb 05 (Print Publication: 2021).
Autor:
Yang WR; Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA., Ardeljan D; Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.; McKusick-Nathans Institute of Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA., Pacyna CN; Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.; Thomas C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, MD, USA., Payer LM; Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA., Burns KH; Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.; McKusick-Nathans Institute of Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Publikováno v:
Nucleic acids research [Nucleic Acids Res] 2019 Mar 18; Vol. 47 (5), pp. e27.