Integration of absolute multi-omics reveals dynamic protein-to-RNA ratios and metabolic interplay within mixed-domain microbiomes

Autor: F. Delogu, B. J. Kunath, P. N. Evans, M. Ø. Arntzen, T. R. Hvidsten, P. B. Pope

Publikováno v: Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)

Here, the authors perform a temporal multi-omic analysis of a minimalistic cellulose-degrading and methane-producing consortium at the strain level and estimate protein-to-RNA ratios and RNA-protein dynamics of the community simultaneously over time.

Externí odkaz: https://doaj.org/article/c767339345b0433789eef83c3064f677

The need for high-resolution gut microbiome characterization to design efficient strategies for sustainable aquaculture production

Autor: Shashank Gupta, Arturo Vera-Ponce de León, Miyako Kodama, Matthias Hoetzinger, Cecilie G. Clausen, Louisa Pless, Ana R. A. Verissimo, Bruno Stengel, Virginia Calabuig, Renate Kvingedal, Stanko Skugor, Bjørge Westereng, Thomas Nelson Harvey, Anna Nordborg, Stefan Bertilsson, Morten T. Limborg, Turid Mørkøre, Simen R. Sandve, Phillip B. Pope, Torgeir R. Hvidsten, Sabina Leanti La Rosa

Publikováno v: Communications Biology, Vol 7, Iss 1, Pp 1-10 (2024)

Abstract Microbiome-directed dietary interventions such as microbiota-directed fibers (MDFs) have a proven track record in eliciting responses in beneficial gut microbes and are increasingly being promoted as an effective strategy to improve animal p

Externí odkaz: https://doaj.org/article/7bde0d35107d48248748f5fd7486780a

Novel Syntrophic Populations Dominate an Ammonia-Tolerant Methanogenic Microbiome

Autor: J. A. Frank, M. Ø. Arntzen, L. Sun, L. H. Hagen, A. C. McHardy, S. J. Horn, V. G. H. Eijsink, A. Schnürer, P. B. Pope

Publikováno v: mSystems, Vol 1, Iss 5 (2016)

ABSTRACT Biogas reactors operating with protein-rich substrates have high methane potential and industrial value; however, they are highly susceptible to process failure because of the accumulation of ammonia. High ammonia levels cause a decline in a

Externí odkaz: https://doaj.org/article/b306cb5d666e4ad4ace0f2d6d2058459

Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

Autor: Fei Xie, Shengwei Zhao, Xiaoxiu Zhan, Yang Zhou, Yin Li, Weiyun Zhu, Phillip B. Pope, Graeme T. Attwood, Wei Jin, Shengyong Mao

Publikováno v: Genome Biology, Vol 25, Iss 1, Pp 1-31 (2024)

Abstract Background Methanomassiliicoccales are a recently identified order of methanogens that are diverse across global environments particularly the gastrointestinal tracts of animals; however, their metabolic capacities are defined via a limited

Externí odkaz: https://doaj.org/article/0adb2c8f322c46089d0c209e7f1e8bfd

A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society

Autor: Kenneth Timmis, John E. Hallsworth, Terry J. McGenity, Rachel Armstrong, María Francisca Colom, Zeynep Ceren Karahan, Max Chavarría, Patricia Bernal, Eric S. Boyd, Juan Luis Ramos, Martin Kaltenpoth, Carla Pruzzo, Gerard Clarke, Purificación López‐Garcia, Michail M. Yakimov, Jessamyn Perlmutter, Chris Greening, Emiley Eloe‐Fadrosh, Willy Verstraete, Olga C. Nunes, Oleg Kotsyurbenko, Pablo Iván Nikel, Paola Scavone, Max M. Häggblom, Rob Lavigne, Frédérique Le Roux, James K. Timmis, Victor Parro, Carmen Michán, José Luis García, Arturo Casadevall, Shelley M. Payne, Joachim Frey, Omry Koren, James I. Prosser, Leo Lahti, Rup Lal, Shailly Anand, Utkarsh Sood, Pierre Offre, Casey C. Bryce, Allen Y. Mswaka, Jörg Jores, Betül Kaçar, Lars Mathias Blank, Nicole Maaßen, Phillip B. Pope, Horia L. Banciu, Judith Armitage, Sang Yup Lee, Fengping Wang, Thulani P. Makhalanyane, Jack A. Gilbert, Thomas K. Wood, Branka Vasiljevic, Mario Soberón, Zulema Udaondo, Fernando Rojo, Jyoti Prakash Tamang, Tatiana Giraud, Jeanne Ropars, Thaddeus Ezeji, Volker Müller, Hirofume Danbara, Beate Averhoff, Angela Sessitsch, Laila Pamela Partida‐Martínez, Wei Huang, Søren Molin, Pilar Junier, Ricardo Amils, Xiao‐Lei Wu, Eliora Ron, Huseyin Erten, Elaine Cristina Pereira deMartinis, Alexander Rapoport, Maarja Öpik, W. Donald R. Pokatong, Courtney Stairs, Mohammad Ali Amoozegar, Jéssica Gil Serna

Publikováno v: Microbial Biotechnology, Vol 17, Iss 5, Pp n/a-n/a (2024)

Executive summary Microbes are all pervasive in their distribution and influence on the functioning and well‐being of humans, life in general and the planet. Microbially‐based technologies contribute hugely to the supply of important goods and se

Externí odkaz: https://doaj.org/article/e28069875a95461394a5a0447dd4fdba