Zobrazeno 1 - 10
of 1 370
pro vyhledávání: '"P Lemey"'
Autor:
Brusselmans, Marius, Carvalho, Luiz Max, Hong, Samuel L., Gao, Jiansi, Matsen IV, Frederick A., Rambaut, Andrew, Lemey, Philippe, Suchard, Marc A., Dudas, Gytis, Baele, Guy
Modern phylogenetics research is often performed within a Bayesian framework, using sampling algorithms such as Markov chain Monte Carlo (MCMC) to approximate the posterior distribution. These algorithms require careful evaluation of the quality of t
Externí odkaz:
http://arxiv.org/abs/2402.11657
Autor:
Cheraghinia, Mohammad, Shahid, Adnan, Luchie, Stijn, Gordebeke, Gert-Jan, Caytan, Olivier, Fontaine, Jaron, Van Herbruggen, Ben, Lemey, Sam, De Poorter, Eli
Due to their large bandwidth, relatively low cost, and robust performance, UWB radio chips can be used for a wide variety of applications, including localization, communication, and radar. This article offers an exhaustive survey of recent progress i
Externí odkaz:
http://arxiv.org/abs/2402.05649
Autor:
Lin, Chin-Yi, Chen, Kuo-Chin, Lemey, Philippe, Suchard, Marc A., Holbrook, Andrew J., Hsieh, Min-Hsiu
Multiproposal Markov chain Monte Carlo (MCMC) algorithms choose from multiple proposals at each iteration in order to sample from challenging target distributions more efficiently. Recent work demonstrates the possibility of quadratic quantum speedup
Externí odkaz:
http://arxiv.org/abs/2312.01402
Autor:
Senne Heeren, Mandy Sanders, Jeffrey Jon Shaw, Sinval Pinto Brandão-Filho, Mariana Côrtes Boité, Lilian Motta Cantanhêde, Khaled Chourabi, Ilse Maes, Alejandro Llanos-Cuentas, Jorge Arevalo, Jorge D. Marco, Philippe Lemey, James A. Cotton, Jean-Claude Dujardin, Elisa Cupolillo, Frederik Van den Broeck
Publikováno v:
Communications Biology, Vol 7, Iss 1, Pp 1-14 (2024)
Abstract The Neotropical realm, one of the most biodiverse regions on Earth, houses a broad range of zoonoses that pose serious public health threats. Protozoan parasites of the Leishmania (Viannia) braziliensis clade cause zoonotic leishmaniasis in
Externí odkaz:
https://doaj.org/article/b3e0324f98aa456a8e257a0e808eca42
Autor:
Marcela M. Uhart, Ralph E. T. Vanstreels, Martha I. Nelson, Valeria Olivera, Julieta Campagna, Victoria Zavattieri, Philippe Lemey, Claudio Campagna, Valeria Falabella, Agustina Rimondi
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-14 (2024)
Abstract H5N1 high pathogenicity avian influenza virus has killed thousands of marine mammals in South America since 2022. Here we report epidemiological data and full genome characterization of clade 2.3.4.4b H5N1 HPAI viruses associated with a mass
Externí odkaz:
https://doaj.org/article/407d7b34e77b4ef290e43cb7f11696c9
Autor:
Magee, Andrew F., Holbrook, Andrew J., Pekar, Jonathan E., Caviedes-Solis, Itzue W., Matsen IV, Fredrick A., Baele, Guy, Wertheim, Joel O., Ji, Xiang, Lemey, Philippe, Suchard, Marc A.
Phylogenetic and discrete-trait evolutionary inference depend heavily on an appropriate characterization of the underlying character substitution process. In this paper, we present random-effects substitution models that extend common continuous-time
Externí odkaz:
http://arxiv.org/abs/2303.13642
Autor:
Gangavarapu, Karthik, Ji, Xiang, Baele, Guy, Fourment, Mathieu, Lemey, Philippe, Matsen IV, Frederick A., Suchard, Marc A.
The rapid growth in genomic pathogen data spurs the need for efficient inference techniques, such as Hamiltonian Monte Carlo (HMC) in a Bayesian framework, to estimate parameters of these phylogenetic models where the dimensions of the parameters inc
Externí odkaz:
http://arxiv.org/abs/2303.04390
Autor:
Simon Dellicour, Paul Bastide, Pauline Rocu, Denis Fargette, Olivier J Hardy, Marc A Suchard, Stéphane Guindon, Philippe Lemey
Publikováno v:
PLoS Biology, Vol 22, Iss 12, p e3002914 (2024)
Genomic data collected from viral outbreaks can be exploited to reconstruct the dispersal history of viral lineages in a two-dimensional space using continuous phylogeographic inference. These spatially explicit reconstructions can subsequently be us
Externí odkaz:
https://doaj.org/article/57627a99a5d3495cbaa53cdf91ffc4f7
Autor:
Annefleur C. Langedijk, Bram Vrancken, Robert Jan Lebbink, Deidre Wilkins, Elizabeth J. Kelly, Eugenio Baraldi, Abiel Homero Mascareñas de Los Santos, Daria M. Danilenko, Eun Hwa Choi, María Angélica Palomino, Hsin Chi, Christian Keller, Robert Cohen, Jesse Papenburg, Jeffrey Pernica, Anne Greenough, Peter Richmond, Federico Martinón-Torres, Terho Heikkinen, Renato T. Stein, Mitsuaki Hosoya, Marta C. Nunes, Charl Verwey, Anouk Evers, Leyla Kragten-Tabatabaie, Marc A. Suchard, Sergei L. Kosakovsky Pond, Chiara Poletto, Vittoria Colizza, Philippe Lemey, Louis J. Bont, on behalf of the INFORM-RSV Study Group
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-12 (2024)
Abstract Respiratory syncytial virus (RSV) is a leading cause of acute lower respiratory tract infection in young children and the second leading cause of infant death worldwide. While global circulation has been extensively studied for respiratory v
Externí odkaz:
https://doaj.org/article/45e7038869c54007951a43a1f120bf0b
Autor:
Benjamin Faucher, Chiara E. Sabbatini, Peter Czuppon, Moritz U. G. Kraemer, Philippe Lemey, Vittoria Colizza, François Blanquart, Pierre-Yves Boëlle, Chiara Poletto
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)
Abstract SARS-CoV-2 variants of concern (VOCs) circulated cryptically before being identified as a threat, delaying interventions. Here we studied the drivers of such silent spread and its epidemic impact to inform future response planning. We focuse
Externí odkaz:
https://doaj.org/article/839dc0eefe7e47308635fa75d4d49ae4