Zobrazeno 1 - 10
of 48
pro vyhledávání: '"P D, Finn"'
Publikováno v:
Scientific Reports, Vol 14, Iss 1, Pp 1-15 (2024)
Abstract Cyanobacteria are globally occurring photosynthetic bacteria notable for their contribution to primary production and production of toxins which have detrimental ecosystem impacts. Furthermore, cyanobacteria can form mutualistic symbiotic re
Externí odkaz:
https://doaj.org/article/990779845c814af0b2e14aaca60f5d05
Autor:
Gulnara Tagirdzhanova, Paul Saary, Ellen S Cameron, Carmen C G Allen, Arkadiy I Garber, David Díaz Escandón, Andrew T Cook, Spencer Goyette, Veera Tuovinen Nogerius, Alfredo Passo, Helmut Mayrhofer, Håkon Holien, Tor Tønsberg, Lisa Y Stein, Robert D Finn, Toby Spribille
Publikováno v:
PLoS Biology, Vol 22, Iss 11, p e3002862 (2024)
In lichen research, metagenomes are increasingly being used for evaluating symbiont composition and metabolic potential, but the overall content and limitations of these metagenomes have not been assessed. We reassembled over 400 publicly available m
Externí odkaz:
https://doaj.org/article/aa08fbd65f7e4388b6cb09d03f634a27
Publikováno v:
Frontiers in Immunology, Vol 15 (2024)
Induced pluripotent stem cells (iPSCs) have emerged as a revolutionary tool in cell therapies due to their ability to differentiate into various cell types, unlimited supply, and potential as off-the-shelf cell products. New advances in iPSC-derived
Externí odkaz:
https://doaj.org/article/d5d06273785242f695abf38a4fb02a31
Autor:
Qiang Lin, Basil Britto Xavier, Blaise T. F. Alako, Alex L. Mitchell, Sahaya Glingston Rajakani, Youri Glupczynski, Robert D. Finn, Guy Cochrane, Surbhi Malhotra-Kumar
Publikováno v:
Communications Biology, Vol 5, Iss 1, Pp 1-9 (2022)
An extensive metagenomic analysis investigates the global distribution of antimicrobial resistance genes over different biomes, which are primarily influenced by host genera and environment rather than geographic or anthropogenic factors.
Externí odkaz:
https://doaj.org/article/11bfa9c6a19f47d2951db728d26cb1dc
Autor:
Guillermo Rangel-Pineros, Alexandre Almeida, Martin Beracochea, Ekaterina Sakharova, Manja Marz, Alejandro Reyes Muñoz, Martin Hölzer, Robert D Finn
Publikováno v:
PLoS Computational Biology, Vol 19, Iss 8, p e1011422 (2023)
The study of viral communities has revealed the enormous diversity and impact these biological entities have on various ecosystems. These observations have sparked widespread interest in developing computational strategies that support the comprehens
Externí odkaz:
https://doaj.org/article/e1d8683e840c49e5a3bfa6198610a74e
Autor:
Choon K. Sim, Sara Saheb Kashaf, Apollo Stacy, Diana M. Proctor, Alexandre Almeida, Nicolas Bouladoux, Mark Chen, NISC Comparative Sequencing Program, Robert D. Finn, Yasmine Belkaid, Sean Conlan, Julia A. Segre
Publikováno v:
Microbiome, Vol 10, Iss 1, Pp 1-16 (2022)
Abstract Background The human intestinal microbiome is a complex community that contributes to host health and disease. In addition to normal microbiota, pathogens like carbapenem-resistant Enterobacteriaceae may be asymptomatically present. When the
Externí odkaz:
https://doaj.org/article/8196fd2b58d84f188446150d8089e555
Autor:
Fotis A. Baltoumas, Evangelos Karatzas, David Paez-Espino, Nefeli K. Venetsianou, Eleni Aplakidou, Anastasis Oulas, Robert D. Finn, Sergey Ovchinnikov, Evangelos Pafilis, Nikos C. Kyrpides, Georgios A. Pavlopoulos
Publikováno v:
Frontiers in Bioinformatics, Vol 3 (2023)
Metagenomics has enabled accessing the genetic repertoire of natural microbial communities. Metagenome shotgun sequencing has become the method of choice for studying and classifying microorganisms from various environments. To this end, several meth
Externí odkaz:
https://doaj.org/article/f02d335b56704ff4a762c935e45990f2
Autor:
Russell E. McConnell, Madeleine Youniss, Bhargavee Gnanasambandam, Palak Shah, Wei Zhang, Jonathan D. Finn
Publikováno v:
Journal of Extracellular Vesicles, Vol 11, Iss 10, Pp n/a-n/a (2022)
Abstract Extracellular vesicles (EV) are important mediators of cell communication and physiology. EVs are frequently investigated by transiently transfecting cells with plasmid DNA to produce EVs modified with protein(s) or nucleic acid(s) of intere
Externí odkaz:
https://doaj.org/article/5572a1ba3d0b43238c03d44df46c209d
Autor:
Blake A. Sweeney, David Hoksza, Eric P. Nawrocki, Carlos Eduardo Ribas, Fábio Madeira, Jamie J. Cannone, Robin Gutell, Aparna Maddala, Caeden D. Meade, Loren Dean Williams, Anton S. Petrov, Patricia P. Chan, Todd M. Lowe, Robert D. Finn, Anton I. Petrov
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
Non-coding RNA function is poorly understood, partly due to the challenge of determining RNA secondary (2D) structure. Here, the authors present a framework for the reproducible prediction and visualization of the 2D structure of a wide array of RNAs
Externí odkaz:
https://doaj.org/article/08c55853e54b4060954e1a43ffedc3a6
Autor:
Denise M. O’Sullivan, Ronan M. Doyle, Sasithon Temisak, Nicholas Redshaw, Alexandra S. Whale, Grace Logan, Jiabin Huang, Nicole Fischer, Gregory C. A. Amos, Mark D. Preston, Julian R. Marchesi, Josef Wagner, Julian Parkhill, Yair Motro, Hubert Denise, Robert D. Finn, Kathryn A. Harris, Gemma L. Kay, Justin O’Grady, Emma Ransom-Jones, Huihai Wu, Emma Laing, David J. Studholme, Ernest Diez Benavente, Jody Phelan, Taane G. Clark, Jacob Moran-Gilad, Jim F. Huggett
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-14 (2021)
Abstract Despite the advent of whole genome metagenomics, targeted approaches (such as 16S rRNA gene amplicon sequencing) continue to be valuable for determining the microbial composition of samples. Amplicon microbiome sequencing can be performed on
Externí odkaz:
https://doaj.org/article/8468c62cda324455a0cd7a1fb1c847ee