WorkflowHub: a registry for computational workflows

Autor: Gustafsson, Ove Johan Ragnar, Wilkinson, Sean R., Bacall, Finn, Pireddu, Luca, Soiland-Reyes, Stian, Leo, Simone, Owen, Stuart, Juty, Nick, Fernández, José M., Grüning, Björn, Brown, Tom, Ménager, Hervé, Capella-Gutierrez, Salvador, Coppens, Frederik, Goble, Carole

The rising popularity of computational workflows is driven by the need for repetitive and scalable data processing, sharing of processing know-how, and transparent methods. As both combined records of analysis and descriptions of processing steps, wo

Externí odkaz: http://arxiv.org/abs/2410.06941

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium

Autor: Katayama Toshiaki, Arakawa Kazuharu, Nakao Mitsuteru, Ono Keiichiro, Aoki-Kinoshita Kiyoko F, Yamamoto Yasunori, Yamaguchi Atsuko, Kawashima Shuichi, Chun Hong-Woo, Aerts Jan, Aranda Bruno, Barboza Lord, Bonnal Raoul JP, Bruskiewich Richard, Bryne Jan C, Fernández José M, Funahashi Akira, Gordon Paul MK, Goto Naohisa, Groscurth Andreas, Gutteridge Alex, Holland Richard, Kano Yoshinobu, Kawas Edward A, Kerhornou Arnaud, Kibukawa Eri, Kinjo Akira R, Kuhn Michael, Lapp Hilmar, Lehvaslaiho Heikki, Nakamura Hiroyuki, Nakamura Yasukazu, Nishizawa Tatsuya, Nobata Chikashi, Noguchi Tamotsu, Oinn Thomas M, Okamoto Shinobu, Owen Stuart, Pafilis Evangelos, Pocock Matthew, Prins Pjotr, Ranzinger René, Reisinger Florian, Salwinski Lukasz, Schreiber Mark, Senger Martin, Shigemoto Yasumasa, Standley Daron M, Sugawara Hideaki, Tashiro Toshiyuki, Trelles Oswaldo, Vos Rutger A, Wilkinson Mark D, York William, Zmasek Christian M, Asai Kiyoshi, Takagi Toshihisa

Publikováno v: Journal of Biomedical Semantics, Vol 1, Iss 1, p 8 (2010)

Abstract Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems without the need to transfer ent

Externí odkaz: https://doaj.org/article/daa32dc8e338496886d3efaa44124737

Populous: A tool for populating ontology templates

Autor: Jupp, Simon, Horridge, Matthew, Iannone, Luigi, Klein, Julie, Owen, Stuart, Schanstra, Joost, Stevens, Robert, Wolstencroft, Katy

We present Populous, a tool for gathering content with which to populate an ontology. Domain experts need to add content, that is often repetitive in its form, but without having to tackle the underlying ontological representation. Populous presents

Externí odkaz: http://arxiv.org/abs/1012.1745

RO-Crate Metadata Specification 1.1.3

Autor: Sefton, Peter, Ó Carragáin, Eoghan, Soiland-Reyes, Stian, Corcho, Oscar, Garijo, Daniel, Palma, Raul, Coppens, Frederik, Goble, Carole, Fernández, José M., Chard, Kyle, Gomez-Perez, Jose Manuel, Crusoe, Michael R., Eguinoa, Ignacio, Juty, Nick, Holmes, Kristi, Clark, Jason A., Capella-Gutierrez, Salvador, Gray, Alasdair J. G., Owen, Stuart, Williams, Alan R., Tartari, Giacomo, Bacall, Finn, Thelen, Thomas, Ménager, Hervé, Rodríguez-Navas, Laura, Walk, Paul, whitehead, brandon, Wilkinson, Mark, Groth, Paul, Bremer, Erich, Castro, Leyla Jael, Sebby, Karl, Kanitz, Alexander, Trisovic, Ana, Kennedy, Gavin, Graves, Mark, Koehorst, Jasper, Leo, Simone, Portier, Marc, Brack, Paul, Ojsteršek, Milan, Droesbeke, Bert, Niu, Chenxu, Tanabe, Kosuke, Miksa, Tomasz, La Rosa, Marco, Decruw, Cedric, Czerniak, Andreas, Jay, Jeremy, Serra, Sergio, Siebes, Ronald, de Witt, Shaun, El Damaty, Shady, Lowe, Douglas, Li, Xuanqi, Gundersen, Sveinung, Radifar, Muhammad

Web-version: https://w3id.org/ro/crate/1.1 This document specifies a method, known as RO-Crate (Research Object Crate), of aggregating and describing research data with associated metadata. RO-Crates can aggregate and describe any resource including

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::093d2d1c1022dec376cb1b8e785c1d22

BioHackEU22 Project 22: Plant data exchange and standard interoperability

Autor: Arend, Daniel, Beier, Sebastian, bouri, laurent, Brandizi, Marco, Hobern, Donald, Floch, Erwan Le, Mühlhaus, Timo, Pommier, Cyril, Owen, Stuart, Rocca-Serra, Philippe, Rosnet, Thomas, Soiland-Reyes, Stian

Publikováno v: Arend, D, Beier, S, bouri, L, Brandizi, M, Hobern, D, Floch, E L, Mühlhaus, T, Pommier, C, Owen, S, Rocca-Serra, P, Rosnet, T & Soiland-Reyes, S 2022 ' BioHackEU22 Project 22: Plant data exchange and standard interoperability ' . https://doi.org/10.37044/osf.io/c724r

Status of discussions around the topic of data standard formats for plant sciences and their interoperability at the BioHackathon Europe 2022 in Paris.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3818::b3659840216348bc0540e0143a1a6e57
https://doi.org/10.37044/osf.io/c724r