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pro vyhledávání: '"Ouangraoua, Aida"'
Motivation: Non-coding RNAs (ncRNAs) express their functions by adopting molecular structures. Specifically, RNA secondary structures serve as a relatively stable intermediate step before tertiary structures, offering a reliable signature of molecula
Externí odkaz:
http://arxiv.org/abs/2402.03455
Autor:
Ouedraogo, Wend Yam D. D.1 (AUTHOR) wend.yam.donald.davy.ouedraogo@usherbrooke.ca, Ouangraoua, Aida1 (AUTHOR)
Publikováno v:
BMC Bioinformatics. 7/11/2024, Vol. 25 Issue 1, p1-13. 13p.
The Spliced Alignment Problem (SAP) that consists in finding an optimal semi-global alignment of a spliced RNA sequence on an unspliced genomic sequence has been largely considered for the prediction and the annotation of gene structures in genomes.
Externí odkaz:
http://arxiv.org/abs/1709.06169
Akademický článek
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The architecture of eukaryotic coding genes allows the production of several different protein isoforms by genes. Current gene phylogeny reconstruction methods make use of a single protein product per gene, ignoring information on alternative protein
Externí odkaz:
http://arxiv.org/abs/1610.09732
Autor:
Jammali, Safa, Kuitche, Esaie, Rachati, Ayoub, Bélanger, François, Scott, Michelle, Ouangraoua, Aïda
Publikováno v:
Algorithms for Molecular Biology, 2017, vol. 12, no 1, p. 10
Frameshift translation is an important phenomenon that contributes to the appearance of novel Coding DNA Sequences (CDS) and functions in gene evolution, by allowing alternative amino acid translations of genes coding regions. Frameshift translations
Externí odkaz:
http://arxiv.org/abs/1610.08809
The supertree problem asking for a tree displaying a set of consistent input trees has been largely considered for the reconstruction of species trees. Here, we rather explore this framework for the sake of reconstructing a gene tree from a set of in
Externí odkaz:
http://arxiv.org/abs/1610.05068
Autor:
Luhmann, Nina, Lafond, Manuel, Thévenin, Annelyse, Ouangraoua, Aïda, Wittler, Roland, Chauve, Cedric
Reconstructing ancestral gene orders in a given phylogeny is a classical problem in comparative genomics. Most existing methods compare conserved features in extant genomes in the phylogeny to define potential ancestral gene adjacencies, and either t
Externí odkaz:
http://arxiv.org/abs/1603.08819
Autor:
Bélanger, François, Ouangraoua, Aïda
We introduce an algorithm for the alignment of protein- coding sequences accounting for frameshifts. The main specificity of this algorithm as compared to previously published protein-coding sequence alignment methods is the introduction of a penalty
Externí odkaz:
http://arxiv.org/abs/1508.04783
This paper has been withdrawn by the author.
Comment: This paper has been withdrawn by the author
Comment: This paper has been withdrawn by the author
Externí odkaz:
http://arxiv.org/abs/1206.6899