Integrating Genomic and Transcriptomic Data to Reveal Genetic Mechanisms Underlying Piao Chicken Rumpless Trait

Autor: Wang, Yun-Mei, Khederzadeh, Saber, Li, Shi-Rong, Otecko, Newton Otieno, Irwin, David M., Thakur, Mukesh, Ren, Xiao-Die, Wang, Ming-Shan, Wu, Dong-Dong, Zhang, Ya-Ping

Publikováno v: In Genomics, Proteomics & Bioinformatics October 2021 19(5):787-799

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Author Correction: 863 genomes reveal the origin and domestication of chicken.

Autor: Wang MS; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China.; Department of Ecology and Evolutionary Biology, Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Thakur M; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Zoological Survey of India, New Alipore, Kolkata, West Bengal, India., Peng MS; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan, China., Jiang Y; Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China., Frantz LAF; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; The Palaeogenomics and Bio-Archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford, UK.; School of Biological and Chemical Sciences, Queen Mary University of London, London, UK., Li M; Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China., Zhang JJ; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Wang S; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Peters J; ArchaeoBioCenter and Department of Veterinary Sciences, Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, LMU Munich, Munich, Germany.; SNSB, Bavarian State Collection of Anthropology and Palaeoanatomy, Munich, Germany., Otecko NO; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Suwannapoom C; School of Agriculture and Natural Resources, University of Phayao, Phayao, Thailand., Guo X; College of Animal Science and Technology, Anhui Agricultural University, Hefei, Anhui, China., Zheng ZQ; Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China., Esmailizadeh A; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Department of Animal Science, Shahid Bahonar University of Kerman, Kerman, Iran., Hirimuthugoda NY; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Faculty of Agriculture, University of Ruhuna, Matara, Sri Lanka., Ashari H; Museum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Science (LIPI), Cibinong, Indonesia.; CAAS-ILRI Joint Laboratory on Livestock and Forage Genetic Resources, Institute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing, China., Suladari S; Museum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Science (LIPI), Cibinong, Indonesia., Zein MSA; Museum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Science (LIPI), Cibinong, Indonesia., Kusza S; Institute of Animal Husbandry, Biotechnology and Nature Conservation, University of Debrecen, Debrecen, Hungary., Sohrabi S; Department of Animal Science, Shahid Bahonar University of Kerman, Kerman, Iran., Kharrati-Koopaee H; Department of Animal Science, Shahid Bahonar University of Kerman, Kerman, Iran.; Institute of Biotechnology, School of Agriculture, Shiraz University, Shiraz, Iran., Shen QK; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Zeng L; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Yang MM; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Wu YJ; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; State Key Laboratory for Conservation and Utilization of Bioresource, Yunnan University, Kunming, Yunnan, China., Yang XY; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; State Key Laboratory for Conservation and Utilization of Bioresource, Yunnan University, Kunming, Yunnan, China., Lu XM; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan, China., Jia XZ; Livestock Genetics Program, International Livestock Research Institute (ILRI), Nairobi, Kenya.; Department of Animal Science, Iowa State University, Ames, IA, USA., Nie QH; College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China., Lamont SJ; Department of Animal Science, Iowa State University, Ames, IA, USA., Lasagna E; Dipartimento di Scienze Agrarie, Alimentari e Ambientali, University of Perugia, Perugia, Italy., Ceccobelli S; Dipartimento di Scienze Agrarie, Alimentari e Ambientali, University of Perugia, Perugia, Italy., Gunwardana HGTN; Faculty of Agriculture, University of Ruhuna, Matara, Sri Lanka., Senasige TM; Faculty of Agriculture, University of Ruhuna, Matara, Sri Lanka., Feng SH; BGI-Shenzhen, Beishan Industrial Zone, Shenzhen, Guangdong, China., Si JF; Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture of China, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China., Zhang H; Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture of China, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China., Jin JQ; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Southeast Asia Biodiversity Research Institute, Chinese Academy of Sciences (CAS-SEABRI), Yezin, Myanmar., Li ML; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Liu YH; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Chen HM; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Ma C; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Dai SS; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Bhuiyan AKFH; Bangladesh Agricultural University, Mymensingh, Bangladesh., Khan MS; University of Agriculture Faisalabad, Faisalabad, Pakistan., Silva GLLP; Department of Animal Science, University of Peradeniya, Peradeniya, Sri Lanka., Le TT; National Institute of Animal Husbandry, Hanoi, Vietnam., Mwai OA; Livestock Genetics Program, International Livestock Research Institute (ILRI), Nairobi, Kenya., Ibrahim MNM; Livestock Genetics Program, International Livestock Research Institute (ILRI), Nairobi, Kenya., Supple M; Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA, USA., Shapiro B; Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA, USA.; Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Hanotte O; Cells, Organisms and Molecular Genetics, School of Life Sciences, University of Nottingham, Nottingham, UK.; Livestock Genetics Program, International Livestock Research Institute (ILRI), Addis Ababa, Ethiopia., Zhang G; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan, China.; Department of Biology, Centre for Social Evolution, University of Copenhagen, Copenhagen, Denmark.; China National Genebank, BGI-Shenzhen, Shenzhen, Guangdong, China., Larson G; The Palaeogenomics and Bio-Archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford, UK., Han JL; CAAS-ILRI Joint Laboratory on Livestock and Forage Genetic Resources, Institute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing, China. h.jianlin@cgiar.org.; Livestock Genetics Program, International Livestock Research Institute (ILRI), Nairobi, Kenya. h.jianlin@cgiar.org., Wu DD; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China. wudongdong@mail.kiz.ac.cn.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China. wudongdong@mail.kiz.ac.cn.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan, China. wudongdong@mail.kiz.ac.cn., Zhang YP; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China. zhangyp@mail.kiz.ac.cn.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China. zhangyp@mail.kiz.ac.cn.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan, China. zhangyp@mail.kiz.ac.cn.; State Key Laboratory for Conservation and Utilization of Bioresource, Yunnan University, Kunming, Yunnan, China. zhangyp@mail.kiz.ac.cn.

Publikováno v: Cell research [Cell Res] 2020 Sep; Vol. 30 (9), pp. 824-825.